Factsheet for GSMUA_Achr6P18670_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr4P31680_001
GSMUA_Achr5P02390_001
GSMUA_Achr9P20940_001
GSMUA_Achr9P20950_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20240.1	GSMUA_Achr10P...	AT1G22920.1	21798944
AT5G20240.1	GSMUA_Achr11P...	AT3G02310.1	15604664
AT5G20240.1	GSMUA_Achr9P20940_001	AT3G54340.1	15604664
AT5G20240.1	GSMUA_Achr9P20950_001	AT3G54340.1	15604664
AT5G20240.1	GSMUA_Achr4P31680_001	AT5G58230.1	23778966
AT5G20240.1	GSMUA_Achr5P02390_001	AT5G58230.1	23778966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P01230_001	Banana	nucleus	86.73	86.73
VIT_18s0001g01760.t01	Wine grape	nucleus	68.25	67.92
Os01t0883100-01	Rice	nucleus	66.82	67.46
EES01864	Sorghum	nucleus	65.88	66.51
Os05t0423400-01	Rice	nucleus	65.88	64.65
EES18254	Sorghum	nucleus	64.45	64.15
Zm00001d010232_P001	Maize	nucleus	63.98	63.68
TraesCS1B01G275000.1	Wheat	nucleus	62.56	63.46
TraesCS3A01G406500.2	Wheat	nucleus	62.56	63.16
Bra002285.1-P	Field mustard	nucleus	43.6	63.01
TraesCS1A01G264300.1	Wheat	nucleus	62.09	62.98
TraesCS3D01G401700.1	Wheat	nucleus	62.09	62.68
KRH64611	Soybean	nucleus	53.08	61.88
Zm00001d042618_P001	Maize	nucleus	65.88	61.78
TraesCS3B01G440200.3	Wheat	nucleus	62.56	61.68
KRH53304	Soybean	nucleus	52.13	60.77
KRH16433	Soybean	nucleus	59.72	60.58
KRH18034	Soybean	nucleus	58.77	59.62
Solyc06g059970.2.1	Tomato	nucleus	60.19	59.35
HORVU1Hr1G063620.1	Barley	nucleus	62.09	58.74
CDY35823	Canola	nucleus	41.71	57.14
CDX92479	Canola	nucleus	41.23	56.49
AT5G20240.1	Thale cress	nucleus	54.98	55.77
PGSC0003DMT400019070	Potato	nucleus	55.45	55.71
CDY60377	Canola	nucleus	53.08	55.17
CDX88846	Canola	nucleus	53.08	55.17
GSMUA_Achr9P20940_001	Banana	nucleus	26.54	54.9
Bra006549.1-P	Field mustard	nucleus	54.03	54.81
Solyc08g067230.2.1	Tomato	nucleus	54.5	54.76
CDY45099	Canola	nucleus	52.61	54.68
Bra020093.1-P	Field mustard	nucleus	52.13	54.19
TraesCS1D01G264500.1	Wheat	nucleus	55.45	53.67
Zm00001d010233_P004	Maize	nucleus	62.56	51.56
HORVU3Hr1G091000.8	Barley	nucleus, plastid	63.03	48.72
GSMUA_Achr3P23580_001	Banana	nucleus	45.5	39.83
GSMUA_Achr2P02660_001	Banana	nucleus	44.55	39.17
GSMUA_Achr9P20950_001	Banana	nucleus	41.23	38.67
PGSC0003DMT400019069	Potato	cytosol	10.43	36.67
GSMUA_Achr9P05780_001	Banana	nucleus	29.38	28.97

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr6G18670_001
EnsemblPlants:GSMUA_Achr6P18670_001	EnsemblPlants:GSMUA_Achr6T18670_001	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M0T865
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF211	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000295839E	SEG:seg	:	:

Description

MADS-box transcription factor 2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G18670_001]

Coordinates

chr6:-:12891180..12893307

Molecular Weight (calculated)

24561.6 Da

IEP (calculated)

7.583

GRAVY (calculated)

-0.779

Length

211 amino acids

Sequence
(BLAST)

001: MGRGKIEIKR IENSTNRQVT FSKRRNGIIK KAREISILCD AHVSVVIFSG SGKMSDYCTP TTALPKILER YQQNSGRKLW DAEHESLSAE IDRIKKENDN
101: MQIELRHLKG EDLNSLYPKE LIPIEEGLQI GLASVRDKQM EIWKMHKKNE KLLEEENEQL TCMLHHQQRA MEGNVMELEV GYHQRDCEFA PQMTMAFRVQ
201: PIQPNLQENN K

Best Arabidopsis Sequence Match ( AT5G20240.1 )
(BLAST)

001: MGRGKIEIKR IENANNRVVT FSKRRNGLVK KAKEITVLCD AKVALIIFAS NGKMIDYCCP SMDLGAMLDQ YQKLSGKKLW DAKHENLSNE IDRIKKENDS
101: LQLELRHLKG EDIQSLNLKN LMAVEHAIEH GLDKVRDHQM EILISKRRNE KMMAEEQRQL TFQLQQQEMA IASNARGMMM RDHDGQFGYR VQPIQPNLQE
201: KIMSLVID

Arabidopsis Description

PIFloral homeotic protein PISTILLATA [Source:UniProtKB/Swiss-Prot;Acc:P48007]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.