Factsheet for Bra006549.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002667.1-P
Bra003986.1-P
Bra004407.1-P
Bra007067.1-P
Bra007875.1-P
Bra012351.1-P
Bra014822.1-P
Bra020379.1-P
Bra021470.1-P
Bra024548.1-P
Bra039170.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20240.1	Bra012351.1-P	AT1G22920.1	21798944
AT5G20240.1	Bra024548.1-P	AT1G22920.1	21798944
AT5G20240.1	Bra003986.1-P	AT1G69690.1	21798944
AT5G20240.1	Bra004407.1-P	AT1G69690.1	21798944
AT5G20240.1	Bra007875.1-P	AT1G69690.1	21798944
AT5G20240.1	Bra021470.1-P	AT3G02310.1	15604664
AT5G20240.1	Bra039170.1-P	AT3G02310.1	15604664
AT5G20240.1	Bra007067.1-P	AT3G54340.1	15604664
AT5G20240.1	Bra014822.1-P	AT3G54340.1	15604664
AT5G20240.1	Bra002667.1-P	AT5G58230.1	23778966
AT5G20240.1	Bra020379.1-P	AT5G58230.1	23778966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002285.1-P	Field mustard	nucleus	67.31	95.89
CDX88846	Canola	nucleus	93.27	95.57
CDY60377	Canola	nucleus	93.27	95.57
AT5G20240.1	Thale cress	nucleus	92.31	92.31
Bra020093.1-P	Field mustard	nucleus	88.94	91.13
KRH64611	Soybean	nucleus	52.88	60.77
KRH53304	Soybean	nucleus	52.4	60.22
KRH16433	Soybean	nucleus	59.62	59.62
VIT_18s0001g01760.t01	Wine grape	nucleus	60.1	58.96
KRH18034	Soybean	nucleus	58.65	58.65
Solyc06g059970.2.1	Tomato	nucleus	59.13	57.48
GSMUA_Achr5P01230_001	Banana	nucleus	55.29	54.5
GSMUA_Achr6P18670_001	Banana	nucleus	54.81	54.03
PGSC0003DMT400019070	Potato	nucleus	53.37	52.86
Os01t0883100-01	Rice	nucleus	52.88	52.63
TraesCS3D01G401700.1	Wheat	nucleus	51.92	51.67
TraesCS3A01G406500.2	Wheat	nucleus	51.92	51.67
TraesCS1B01G275000.1	Wheat	nucleus	51.44	51.44
TraesCS1A01G264300.1	Wheat	nucleus	51.44	51.44
EES01864	Sorghum	nucleus	51.44	51.2
EES18254	Sorghum	nucleus	51.92	50.94
Zm00001d010232_P001	Maize	nucleus	51.44	50.47
TraesCS3B01G440200.3	Wheat	nucleus	51.92	50.47
Os05t0423400-01	Rice	nucleus	51.44	49.77
Zm00001d042618_P001	Maize	nucleus	52.4	48.44
HORVU1Hr1G063620.1	Barley	nucleus	51.44	47.98
TraesCS1D01G264500.1	Wheat	nucleus	45.19	43.12
Zm00001d010233_P004	Maize	nucleus	50.48	41.02
HORVU3Hr1G091000.8	Barley	nucleus, plastid	52.4	39.93
PGSC0003DMT400019069	Potato	cytosol	9.62	33.33
Bra013028.1-P	Field mustard	nucleus	37.5	32.5
Bra029365.1-P	Field mustard	nucleus	34.62	29.75
Bra014822.1-P	Field mustard	nucleus	30.77	28.57
Bra007067.1-P	Field mustard	nucleus	30.29	27.16
Bra026507.1-P	Field mustard	nucleus	38.46	25.56

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra006549	EnsemblPlants:Bra006549.1	EnsemblPlants:Bra006549.1-P	ncoils:Coil
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4CQQ8
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF354	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000253FFD5	:	:	:

Description

AT5G20240 (E=4e-106) PI | PI (PISTILLATA); DNA binding / transcription factor

Coordinates

chrA03:+:3997840..3999866

Molecular Weight (calculated)

24052.3 Da

IEP (calculated)

8.903

GRAVY (calculated)

-0.580

Length

208 amino acids

Sequence
(BLAST)

001: MGRGKIEIKR IENANNRVVT FSKRRNGLVK KAKEITVLCD AKVALIVFAS NGKMTDYCCP SMDLGAMLDQ YQKLSGKKLW DAKHENLSNE IDRIKKENDN
101: LQLELRHLKG EDIQSLNLKN LMAVEHAIEH GLDKVRDHQA CYIKHFLWQE KMLAEENRQL SFQLQQQEMA IASNARGMMM RDHDGQFGYR VQPIQPNLQE
201: KIMSLVID

Best Arabidopsis Sequence Match ( AT5G20240.1 )
(BLAST)

001: MGRGKIEIKR IENANNRVVT FSKRRNGLVK KAKEITVLCD AKVALIIFAS NGKMIDYCCP SMDLGAMLDQ YQKLSGKKLW DAKHENLSNE IDRIKKENDS
101: LQLELRHLKG EDIQSLNLKN LMAVEHAIEH GLDKVRDHQM EILISKRRNE KMMAEEQRQL TFQLQQQEMA IASNARGMMM RDHDGQFGYR VQPIQPNLQE
201: KIMSLVID

Arabidopsis Description

PIFloral homeotic protein PISTILLATA [Source:UniProtKB/Swiss-Prot;Acc:P48007]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.