Factsheet for Bra029365.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69354	Canola	nucleus	100.0	100.0
CDY40800	Canola	nucleus	96.69	96.69
Bra013028.1-P	Field mustard	nucleus	81.41	82.08
AT5G23260.4	Thale cress	nucleus	78.1	70.52
Bra026507.1-P	Field mustard	nucleus	75.62	58.47
VIT_10s0042g00820.t01	Wine grape	nucleus	51.65	52.97
VIT_01s0011g01560.t01	Wine grape	nucleus	46.69	50.45
KRG89112	Soybean	nucleus	48.35	47.76
KRH40895	Soybean	nucleus	47.93	47.54
Solyc11g005120.1.1	Tomato	nucleus	46.69	47.48
GSMUA_Achr3P23580_001	Banana	nucleus	43.39	43.57
Bra002285.1-P	Field mustard	nucleus	25.62	42.47
VIT_02s0025g02350.t01	Wine grape	nucleus	35.54	41.75
GSMUA_Achr2P02660_001	Banana	nucleus	40.91	41.25
Os04t0614100-00	Rice	nucleus	28.93	39.33
Zm00001d018587_P001	Maize	nucleus	26.45	37.87
Bra020093.1-P	Field mustard	nucleus	31.41	37.44
Zm00001d015381_P001	Maize	nucleus	38.43	35.77
EES06346	Sorghum	nucleus	38.02	35.66
TraesCS6D01G147400.1	Wheat	nucleus	36.78	35.32
TraesCS6A01G158100.1	Wheat	nucleus	36.78	35.32
Os06t0667200-01	Rice	nucleus	32.23	35.29
TraesCS6B01G186700.1	Wheat	nucleus	36.78	35.18
HORVU6Hr1G032220.7	Barley	nucleus	37.6	35.0
Bra006549.1-P	Field mustard	nucleus	29.75	34.62
Os02t0170300-01	Rice	nucleus	36.78	34.23
TraesCS2B01G440900.1	Wheat	nucleus	35.12	33.6
OQU82318	Sorghum	nucleus	35.12	33.07
TraesCS3D01G090300.1	Wheat	nucleus	29.34	32.42
TraesCS3D01G102700.1	Wheat	nucleus	30.58	32.31
Zm00001d018767_P001	Maize	nucleus	33.88	32.16
Zm00001d003168_P001	Maize	nucleus	31.82	31.95
HORVU2Hr1G098930.3	Barley	nucleus	35.54	31.16
TraesCS1D01G441200.1	Wheat	nucleus	24.38	31.05
TraesCS2D01G418800.2	Wheat	nucleus	34.71	31.0
KXG20558	Sorghum	nucleus	30.58	30.96
TraesCS2A01G422400.2	Wheat	nucleus	34.71	30.88
TraesCS3A01G090900.1	Wheat	nucleus	28.93	30.84
TraesCS3A01G090300.1	Wheat	nucleus	28.51	30.67
Zm00001d041587_P001	Maize	nucleus	16.94	30.37
TraesCS3B01G105700.2	Wheat	nucleus	28.1	29.96
TraesCS7A01G475000.1	Wheat	nucleus	27.27	29.33
Bra014822.1-P	Field mustard	nucleus	26.86	29.02
Bra007067.1-P	Field mustard	nucleus	27.27	28.45
Zm00001d033701_P001	Maize	nucleus	28.1	28.1
Zm00001d020114_P001	Maize	nucleus	24.79	26.67
HORVU7Hr1G108280.4	Barley	nucleus, plastid	28.93	26.22
HORVU7Hr1G108410.1	Barley	nucleus	22.73	25.23
TraesCS7B01G377700.1	Wheat	nucleus	23.55	25.22
Zm00001d031591_P001	Maize	nucleus	30.17	25.17
Zm00001d047742_P001	Maize	nucleus	30.58	21.7

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra029365	EnsemblPlants:Bra029365.1	EnsemblPlants:Bra029365.1-P	ncoils:Coil
GO:GO:0000003	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009791	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	GO:GO:0048316
InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4EKP8	InterPro:MADS_MEF2-like	PFAM:PF00319
PFAM:PF01486	PRINTS:PR00404	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF257
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	InterPro:TT16-like
UniParc:UPI000254560F	:	:	:	:	:

Description

AT5G23260 (E=5e-102) TT16, ABS | TT16 (TRANSPARENT TESTA16); transcription factor

Coordinates

chrA02:-:25594784..25596745

Molecular Weight (calculated)

28440.0 Da

IEP (calculated)

8.044

GRAVY (calculated)

-0.863

Length

242 amino acids

Sequence
(BLAST)

001: MGRGKIEIKK IENRTARQVT FSKRRSGVIK KAHELSVLCD AHIGLIVFSA TGKLYQHCTE PLTMPQLIDR YLQTNGLRLP DPNDNREEFC HEIEVLRRET
101: CKLELRQRLY RGHGLASIPP HELDGLEQQL EHSVLKIRQR KNELMQQQLE NLSRKRRMLE DDNNNMYRWL HGHRATTEFQ QGGIETKPGE YQQFLEQVQF
201: YNDQQQQPNS FLQLATHPSE IDLNYHLHLA QPNLQNDPMA NI

Best Arabidopsis Sequence Match ( AT5G23260.4 )
(BLAST)

001: MNIEEEGATH KRKKREMGRG KIEIKKIENQ TARQVTFSKR RTGLIKKTRE LSILCDAHIG LIVFSATGKL SEFCSEQNRM PQLIDRYLHT NGLRLPDHHD
101: DQEQLHHEME LLRRETCNLE LRLRPFHGHD LASIPPNELD GLERQLEHSV LKVRERKNEL MQQQLENLSR KRRMLEEDNN NMYRWLHEHR AAMEFQQAGI
201: DTKPGEYQQF IEQLQCYKPG EYQQFLEQQQ QQPNSVLQLA TLPSEIDPTY NLQLAQPNLQ NDPTAQND

Arabidopsis Description

TT16K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT5G23260]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.