Factsheet for VIT_02s0025g02350.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0011g01560.t01	Wine grape	nucleus	52.43	48.21
VIT_10s0042g00820.t01	Wine grape	nucleus	53.4	46.61
Os04t0614100-00	Rice	nucleus	33.98	39.33
CDY45758	Canola	nucleus	46.12	39.26
Bra013028.1-P	Field mustard	nucleus	45.63	39.17
CDY02217	Canola	nucleus	45.63	39.17
Zm00001d018587_P001	Maize	nucleus	31.07	37.87
GSMUA_Achr2P02660_001	Banana	nucleus	43.69	37.5
GSMUA_Achr3P23580_001	Banana	nucleus	43.69	37.34
Solyc11g005120.1.1	Tomato	nucleus	42.23	36.55
CDX87180	Canola	nucleus	42.72	35.92
CDY40800	Canola	nucleus	41.75	35.54
CDY69354	Canola	nucleus	41.75	35.54
Bra029365.1-P	Field mustard	nucleus	41.75	35.54
VIT_18s0001g01760.t01	Wine grape	nucleus	35.44	34.43
AT5G23260.4	Thale cress	nucleus	44.66	34.33
TraesCS6D01G147400.1	Wheat	nucleus	40.29	32.94
TraesCS6A01G158100.1	Wheat	nucleus	40.29	32.94
TraesCS6B01G186700.1	Wheat	nucleus	40.29	32.81
EES06346	Sorghum	nucleus	40.29	32.17
Os02t0170300-01	Rice	nucleus	40.29	31.92
Zm00001d015381_P001	Maize	nucleus	40.29	31.92
HORVU6Hr1G032220.7	Barley	nucleus	39.81	31.54
OQU82318	Sorghum	nucleus	38.35	30.74
Zm00001d003168_P001	Maize	nucleus	35.92	30.71
Os06t0667200-01	Rice	nucleus	32.52	30.32
Zm00001d018767_P001	Maize	nucleus	37.38	30.2
KXG20558	Sorghum	nucleus	34.95	30.13
TraesCS1D01G441200.1	Wheat	nucleus	27.67	30.0
VIT_18s0001g13460.t01	Wine grape	nucleus	32.52	29.65
TraesCS2B01G440900.1	Wheat	nucleus	36.41	29.64
Bra026507.1-P	Field mustard	nucleus	44.66	29.39
CDY16841	Canola	nucleus	45.15	29.25
TraesCS3D01G090300.1	Wheat	nucleus	30.58	28.77
TraesCS7A01G475000.1	Wheat	nucleus	31.07	28.44
HORVU2Hr1G098930.3	Barley	nucleus	37.86	28.26
Zm00001d033701_P001	Maize	nucleus	33.01	28.1
TraesCS2D01G418800.2	Wheat	nucleus	36.41	27.68
TraesCS2A01G422400.2	Wheat	nucleus	36.41	27.57
TraesCS3A01G090300.1	Wheat	nucleus	29.61	27.11
TraesCS3D01G102700.1	Wheat	nucleus	29.61	26.64
TraesCS3A01G090900.1	Wheat	nucleus	29.13	26.43
Zm00001d020114_P001	Maize	nucleus	28.16	25.78
TraesCS3B01G105700.2	Wheat	nucleus	28.16	25.55
Zm00001d041587_P001	Maize	nucleus	16.02	24.44
TraesCS7B01G377700.1	Wheat	nucleus	26.21	23.89
Zm00001d031591_P001	Maize	nucleus	33.01	23.45
HORVU7Hr1G108280.4	Barley	nucleus, plastid	30.1	23.22
VIT_04s0023g02820.t01	Wine grape	nucleus	32.52	21.9
HORVU7Hr1G108410.1	Barley	nucleus	22.82	21.56
Zm00001d047742_P001	Maize	nucleus	33.98	20.53

Protein Annotations

EntrezGene:100263274	wikigene:100263274	MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:CCB58286	ProteinID:CCB58286.1
ncoils:Coil	UniProt:F6HU63	EMBL:FN596251	GO:GO:0000003	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009791	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	GO:GO:0048316	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879
EntrezGene:LOC100263274	wikigene:LOC100263274	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404
ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF257	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	InterPro:TT16-like	UniParc:UPI000210995C
ArrayExpress:VIT_02s0025g02350	EnsemblPlantsGene:VIT_02s0025g02350	EnsemblPlants:VIT_02s0025g02350.t01	RefSeq:XP_002273062	RefSeq:XP_002273062.1	SEG:seg

Description

No Description!

Coordinates

chr2:+:2093246..2094411

Molecular Weight (calculated)

24066.9 Da

IEP (calculated)

9.516

GRAVY (calculated)

-0.722

Length

206 amino acids

Sequence
(BLAST)

001: MGRGKITIKK IEDKTVRQIT FSKRRAGLLK KTHELSVLCD AQIGLIIFSN TGKMFEYCSN SSRMEQIVER YQKAKGTFKH DNKLKIHHID ELKRIRDETH
101: HLQLTLQHHS TTHDLSSIRY EDLEELEQQL EHSMNKVRVL KAQEGQTALV HQATTTKSNQ VEHQQQHQVV LDQYLPLFRE QPSNAVLQLV PIPPQFHPYH
201: YLPGSY

Best Arabidopsis Sequence Match ( AT5G23260.1 )
(BLAST)

001: MNIEEEGATH KRKKREMGRG KIEIKKIENQ TARQVTFSKR RTGLIKKTRE LSILCDAHIG LIVFSATGKL SEFCSEQNRM PQLIDRYLHT NGLRLPDHHD
101: DQEQLHHEME LLRRETCNLE LRLRPFHGHD LASIPPNELD GLERQLEHSV LKVRERKQQL ENLSRKRRML EEDNNNMYRW LHEHRAAMEF QQAGIDTKPG
201: EYQQFIEQLQ CYKPGEYQQF LEQQQQQPNS VLQLATLPSE IDPTYNLQLA QPNLQNDPTA QND

Arabidopsis Description

TT16K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT5G23260]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.