Factsheet for Zm00001d031591_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018587_P001	Maize	nucleus	46.55	79.88
Os04t0614100-00	Rice	nucleus	43.1	70.22
Zm00001d003168_P001	Maize	nucleus	51.38	61.83
Zm00001d018767_P001	Maize	nucleus	53.45	60.78
OQU82318	Sorghum	nucleus	51.38	57.98
Zm00001d033701_P001	Maize	nucleus	46.55	55.79
Zm00001d047742_P001	Maize	nucleus	62.41	53.08
TraesCS2B01G440900.1	Wheat	nucleus	46.21	52.96
TraesCS2D01G418800.2	Wheat	nucleus	45.17	48.34
TraesCS2A01G422400.2	Wheat	nucleus	45.17	48.16
HORVU2Hr1G098930.3	Barley	nucleus	44.83	47.1
Zm00001d020114_P001	Maize	nucleus	29.66	38.22
GSMUA_Achr2P02660_001	Banana	nucleus	30.69	37.08
GSMUA_Achr3P23580_001	Banana	nucleus	30.69	36.93
VIT_10s0042g00820.t01	Wine grape	nucleus	27.93	34.32
VIT_02s0025g02350.t01	Wine grape	nucleus	23.45	33.01
Zm00001d015381_P001	Maize	nucleus	29.31	32.69
CDY45758	Canola	nucleus	26.55	31.82
VIT_01s0011g01560.t01	Wine grape	nucleus	24.48	31.7
Bra013028.1-P	Field mustard	nucleus	26.21	31.67
CDY02217	Canola	nucleus	26.21	31.67
Zm00001d041587_P001	Maize	nucleus	14.48	31.11
CDX87180	Canola	nucleus	26.21	31.02
CDY40800	Canola	nucleus	25.52	30.58
CDY69354	Canola	nucleus	25.17	30.17
Bra029365.1-P	Field mustard	nucleus	25.17	30.17
AT5G23260.4	Thale cress	nucleus	26.9	29.1
Solyc11g005120.1.1	Tomato	nucleus	23.79	28.99
Zm00001d011748_P001	Maize	nucleus	19.31	28.43
Zm00001d036425_P002	Maize	nucleus	22.07	28.19
KRH40895	Soybean	nucleus	23.45	27.87
KRG89112	Soybean	nucleus	22.76	26.94
Zm00001d010232_P001	Maize	nucleus	19.66	26.89
Zm00001d042618_P001	Maize	nucleus	20.34	26.22
CDY16841	Canola	nucleus	26.55	24.21
Bra026507.1-P	Field mustard	nucleus	25.86	23.96
Zm00001d010233_P004	Maize	nucleus	18.97	21.48
Zm00001d043589_P002	Maize	plastid	19.66	20.73

Protein Annotations

MapMan:15.5.14	Gene3D:2.40.50.1000	Gene3D:3.40.1810.10	UniProt:A0A1D6KJS6	ncoils:Coil	GO:GO:0000977
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like	ProteinID:ONM03181.1
PFAM:PF00319	PFAM:PF01486	PFAM:PF16205	PRINTS:PR00404	PFscan:PS50066	PFscan:PS51297
PANTHER:PTHR11945	PANTHER:PTHR11945:SF210	InterPro:Ribosomal_S11_N	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0008458996	EnsemblPlantsGene:Zm00001d031591	EnsemblPlants:Zm00001d031591_P001	EnsemblPlants:Zm00001d031591_T001

Description

MADS-transcription factor 48Protein TRANSPARENT TESTA 16

Coordinates

chr1:-:195617659..195621721

Molecular Weight (calculated)

33609.9 Da

IEP (calculated)

10.543

GRAVY (calculated)

-0.426

Length

290 amino acids

Sequence
(BLAST)

001: MGRGKVELKK IENPTNRQVT FSKRQMGLFK KENEVAILCD AQIGVIVFSG SGRMYEYSSP PWRIASVFDR YLKAPSTRFE EMDIQQKIVQ EMTRMKDERN
101: RLRMIMAQYM AEDLASFSAQ DLSNLEQQIE FSLYKVRLRK IKERISLLPP RPRVQRGERS RSNSNPQRHG QSCSRSAHRS RSERVVVLGG NEGTYFWQIV
201: FAEHHLYPVV VMIEFYLILC DLTDFQAALI SDVHLFHSFI YARLMCVLEL SSKKATKGNK PSKGRNRFWR NIGLGFKIPK EAIKGSFGAL

Best Arabidopsis Sequence Match ( AT5G23260.3 )
(BLAST)

001: MGRGKIEIKK IENQTARQVT FSKRRTGLIK KTRELSILCD AHIGLIVFSA TGKLSEFCSE QNRMPQLIDR YLHTNGLRLP DHHDDQEQLH HEMELLRRET
101: CNLELRLRPF HGHDLASIPP NELDGLERQL EHSVLKVRER KRRMLEEDNN NMYRWLHEHR AAMEFQQAGI DTKPGEYQQF IEQLQCYKPG EYQQFLEQQQ
201: QQPNSVLQLA TLPSEIDPTY NLQLAQPNLQ NDPTAQND

Arabidopsis Description

TT16K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT5G23260]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.