Factsheet for Bra013028.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02217	Canola	nucleus	100.0	100.0
Bra029365.1-P	Field mustard	nucleus	82.08	81.41
AT5G23260.4	Thale cress	nucleus	81.25	72.76
Bra026507.1-P	Field mustard	nucleus	78.33	60.06
VIT_10s0042g00820.t01	Wine grape	nucleus	56.67	57.63
VIT_01s0011g01560.t01	Wine grape	nucleus	50.83	54.46
Solyc11g005120.1.1	Tomato	nucleus	49.58	50.0
KRH40895	Soybean	nucleus	49.17	48.36
KRG89112	Soybean	nucleus	48.75	47.76
GSMUA_Achr3P23580_001	Banana	nucleus	47.92	47.72
Bra002285.1-P	Field mustard	nucleus	28.33	46.58
VIT_02s0025g02350.t01	Wine grape	nucleus	39.17	45.63
GSMUA_Achr2P02660_001	Banana	nucleus	43.75	43.75
Os04t0614100-00	Rice	nucleus	31.25	42.13
Zm00001d018587_P001	Maize	nucleus	28.75	40.83
Zm00001d015381_P001	Maize	nucleus	42.92	39.62
TraesCS6D01G147400.1	Wheat	nucleus	41.25	39.29
TraesCS6A01G158100.1	Wheat	nucleus	41.25	39.29
EES06346	Sorghum	nucleus	42.08	39.15
TraesCS6B01G186700.1	Wheat	nucleus	41.25	39.13
Bra020093.1-P	Field mustard	nucleus	32.92	38.92
HORVU6Hr1G032220.7	Barley	nucleus	42.08	38.85
Os02t0170300-01	Rice	nucleus	41.67	38.46
Bra006549.1-P	Field mustard	nucleus	32.5	37.5
TraesCS3D01G102700.1	Wheat	nucleus	34.58	36.24
Os06t0667200-01	Rice	nucleus	32.92	35.75
OQU82318	Sorghum	nucleus	37.92	35.41
TraesCS3A01G090900.1	Wheat	nucleus	33.33	35.24
TraesCS2B01G440900.1	Wheat	nucleus	37.08	35.18
TraesCS3D01G090300.1	Wheat	nucleus	32.08	35.16
TraesCS3A01G090300.1	Wheat	nucleus	32.92	35.11
TraesCS3B01G105700.2	Wheat	nucleus	32.92	34.8
TraesCS1D01G441200.1	Wheat	nucleus	27.5	34.74
Zm00001d018767_P001	Maize	nucleus	36.25	34.12
KXG20558	Sorghum	nucleus	33.75	33.89
TraesCS7A01G475000.1	Wheat	nucleus	31.67	33.78
Zm00001d003168_P001	Maize	nucleus	33.75	33.61
TraesCS2D01G418800.2	Wheat	nucleus	36.67	32.47
TraesCS2A01G422400.2	Wheat	nucleus	36.67	32.35
HORVU2Hr1G098930.3	Barley	nucleus	37.08	32.25
HORVU7Hr1G108280.4	Barley	nucleus, plastid	33.33	29.96
Bra014822.1-P	Field mustard	nucleus	27.92	29.91
HORVU7Hr1G108410.1	Barley	nucleus	27.08	29.82
Zm00001d033701_P001	Maize	nucleus	30.0	29.75
TraesCS7B01G377700.1	Wheat	nucleus	27.92	29.65
Zm00001d041587_P001	Maize	nucleus	16.67	29.63
Bra007067.1-P	Field mustard	nucleus	28.33	29.31
Zm00001d020114_P001	Maize	nucleus	24.58	26.22
Zm00001d031591_P001	Maize	nucleus	31.67	26.21
Zm00001d047742_P001	Maize	nucleus	32.08	22.58

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra013028	EnsemblPlants:Bra013028.1	EnsemblPlants:Bra013028.1-P	ncoils:Coil
GO:GO:0000003	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009791	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	GO:GO:0048316
InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4D968	InterPro:MADS_MEF2-like	PFAM:PF00319
PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945
PANTHER:PTHR11945:SF257	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
InterPro:TT16-like	UniParc:UPI000243C525	SEG:seg	:	:	:

Description

AT5G23260 (E=7e-095) TT16, ABS | TT16 (TRANSPARENT TESTA16); transcription factor

Coordinates

chrA03:-:20934132..20936426

Molecular Weight (calculated)

28116.4 Da

IEP (calculated)

6.860

GRAVY (calculated)

-0.929

Length

240 amino acids

Sequence
(BLAST)

001: MGRGKIEIKR IENRTSRQVT FSKRRSGLIK KTHELSVLCD AHIGLIVFSA TGKLTEYCSD PSKMPQLIER YLQTNGLRLP DPNDGQEELY QEIEVLRRET
101: CKLELRQRPY HGHDLASIPP HELDALEQQL EHSVLKVRER KNELLQQQLE NLSRKRRMLE VDNSNMYRRL HEHGTAMEFQ QAGIETKPGE YQQFLEQVQY
201: YNEHQQQQPP NSVLQLATLP SEIDPNYHLQ LAQPNLQNDN

Best Arabidopsis Sequence Match ( AT5G23260.4 )
(BLAST)

001: MNIEEEGATH KRKKREMGRG KIEIKKIENQ TARQVTFSKR RTGLIKKTRE LSILCDAHIG LIVFSATGKL SEFCSEQNRM PQLIDRYLHT NGLRLPDHHD
101: DQEQLHHEME LLRRETCNLE LRLRPFHGHD LASIPPNELD GLERQLEHSV LKVRERKNEL MQQQLENLSR KRRMLEEDNN NMYRWLHEHR AAMEFQQAGI
201: DTKPGEYQQF IEQLQCYKPG EYQQFLEQQQ QQPNSVLQLA TLPSEIDPTY NLQLAQPNLQ NDPTAQND

Arabidopsis Description

TT16K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT5G23260]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.