Factsheet for TraesCS3A01G090900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G090300.1	Wheat	nucleus	93.83	94.67
TraesCS3B01G105700.2	Wheat	nucleus	90.31	90.31
TraesCS3D01G090300.1	Wheat	nucleus	82.38	85.39
TraesCS7A01G475000.1	Wheat	nucleus	66.52	67.11
GSMUA_Achr3P23580_001	Banana	nucleus	40.53	38.17
KXG20558	Sorghum	nucleus	37.89	35.98
GSMUA_Achr2P02660_001	Banana	nucleus	37.89	35.83
Os06t0667200-01	Rice	nucleus	34.8	35.75
TraesCS6A01G158100.1	Wheat	nucleus	38.33	34.52
Bra013028.1-P	Field mustard	nucleus	35.24	33.33
CDY02217	Canola	nucleus	35.24	33.33
CDY45758	Canola	nucleus	35.24	33.06
VIT_10s0042g00820.t01	Wine grape	nucleus	33.92	32.63
CDX87180	Canola	nucleus	34.36	31.84
TraesCS3A01G284400.1	Wheat	nucleus	29.07	30.99
TraesCS2A01G422400.2	Wheat	nucleus	36.12	30.15
TraesCS3A01G406500.2	Wheat	nucleus	27.31	29.67
VIT_02s0025g02350.t01	Wine grape	nucleus	26.43	29.13
Solyc11g005120.1.1	Tomato	nucleus	30.4	28.99
CDY69354	Canola	nucleus	30.84	28.93
Bra029365.1-P	Field mustard	nucleus	30.84	28.93
CDY40800	Canola	nucleus	30.84	28.93
KRH40895	Soybean	nucleus	30.84	28.69
VIT_01s0011g01560.t01	Wine grape	nucleus	28.19	28.57
KRG89112	Soybean	nucleus	30.4	28.16
AT5G23260.4	Thale cress	nucleus	32.6	27.61
TraesCS1A01G264300.1	Wheat	nucleus	24.67	26.92
TraesCS7A01G383800.1	Wheat	nucleus	25.99	24.89
CDY16841	Canola	nucleus	34.8	24.84
Bra026507.1-P	Field mustard	nucleus	33.92	24.6
TraesCS6A01G131100.1	Wheat	nucleus	22.91	21.76

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	PFAM:PF00319
PFAM:PF01486	PRINTS:PR00404	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF259
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	EnsemblPlantsGene:TraesCS3A01G090900
EnsemblPlants:TraesCS3A01G090900.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3A:-:57716320..57717731

Molecular Weight (calculated)

25942.7 Da

IEP (calculated)

4.885

GRAVY (calculated)

-0.658

Length

227 amino acids

Sequence
(BLAST)

001: MGRGRTEMKR IHNDVSRRAT FGKRRRGLLK KAGELAVLCG VDLGLLVFDD GGAGKLFDYC SPSTSWSELI ERYESITNHK FQFQFQFQGI DHDDDDQQPL
101: ADLRRERDRL EASVRRQTGE DLPFAATAAE LDDLEQRLEC VLGEVREMKD KLLEQQLAES YHKVHILEDQ NSYLRRMMGE EGQQRAAVEA SSVAPKLPAM
201: AFGGSFPEVE EEELTTLRLW PRQLPDV

Best Arabidopsis Sequence Match ( AT5G23260.2 )
(BLAST)

001: MGRGKIEIKK IENQTARQVT FSKRRTGLIK KTRELSILCD AHIGLIVFSA TGKLSEFCSE QNRMPQLIDR YLHTNGLRLP DHHDDQEQLH HEMELLRRET
101: CNLELRLRPF HGHDLASIPP NELDGLERQL EHSVLKVRER KNELMQQQLE NLSRKRRMLE EDNNNMYRWL HEHRAAMEFQ QAGIDTKPGE YQQFIEQLQC
201: YKPGEYQQFL EQQQQQPNSV LQLATLPSEI DPTYNLQLAQ PNLQNDPTAQ ND

Arabidopsis Description

TT16K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT5G23260]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.