Factsheet for VIT_01s0011g01560.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0042g00820.t01	Wine grape	nucleus	62.5	59.32
VIT_02s0025g02350.t01	Wine grape	nucleus	48.21	52.43
Bra013028.1-P	Field mustard	nucleus	54.46	50.83
CDY02217	Canola	nucleus	54.46	50.83
CDY45758	Canola	nucleus	54.91	50.83
Solyc11g005120.1.1	Tomato	nucleus	50.45	47.48
GSMUA_Achr3P23580_001	Banana	nucleus	50.89	47.3
CDY40800	Canola	nucleus	50.89	47.11
Bra029365.1-P	Field mustard	nucleus	50.45	46.69
CDY69354	Canola	nucleus	50.45	46.69
AT5G23260.4	Thale cress	nucleus	53.12	44.4
CDX87180	Canola	nucleus	47.77	43.67
GSMUA_Achr2P02660_001	Banana	nucleus	45.98	42.92
TraesCS6A01G158100.1	Wheat	nucleus	46.88	41.67
TraesCS6D01G147400.1	Wheat	nucleus	46.88	41.67
Os04t0614100-00	Rice	nucleus	33.04	41.57
TraesCS6B01G186700.1	Wheat	nucleus	46.88	41.5
Zm00001d015381_P001	Maize	nucleus	47.77	41.15
Os02t0170300-01	Rice	nucleus	47.77	41.15
EES06346	Sorghum	nucleus	47.32	41.09
Zm00001d018587_P001	Maize	nucleus	30.8	40.83
HORVU6Hr1G032220.7	Barley	nucleus	46.88	40.38
VIT_18s0001g01760.t01	Wine grape	nucleus	35.27	37.26
Bra026507.1-P	Field mustard	nucleus	50.0	35.78
Zm00001d003168_P001	Maize	nucleus	38.39	35.68
CDY16841	Canola	nucleus	50.45	35.53
OQU82318	Sorghum	nucleus	40.62	35.41
Os06t0667200-01	Rice	nucleus	34.82	35.29
TraesCS1D01G441200.1	Wheat	nucleus	29.91	35.26
KXG20558	Sorghum	nucleus	36.61	34.31
Zm00001d018767_P001	Maize	nucleus	38.84	34.12
TraesCS2B01G440900.1	Wheat	nucleus	37.5	33.2
VIT_18s0001g13460.t01	Wine grape	nucleus	33.48	33.19
Zm00001d041587_P001	Maize	nucleus	19.64	32.59
HORVU2Hr1G098930.3	Barley	nucleus	38.84	31.52
TraesCS7A01G475000.1	Wheat	nucleus	31.25	31.11
TraesCS3D01G102700.1	Wheat	nucleus	31.7	31.0
TraesCS2D01G418800.2	Wheat	nucleus	37.5	31.0
TraesCS2A01G422400.2	Wheat	nucleus	37.5	30.88
TraesCS3D01G090300.1	Wheat	nucleus	29.02	29.68
TraesCS3A01G090900.1	Wheat	nucleus	28.57	28.19
TraesCS3B01G105700.2	Wheat	nucleus	28.57	28.19
Zm00001d033701_P001	Maize	nucleus	30.36	28.1
TraesCS3A01G090300.1	Wheat	nucleus	28.12	28.0
TraesCS7B01G377700.1	Wheat	nucleus	28.12	27.88
Zm00001d020114_P001	Maize	nucleus	27.68	27.56
HORVU7Hr1G108280.4	Barley	nucleus, plastid	30.8	25.84
HORVU7Hr1G108410.1	Barley	nucleus	24.55	25.23
Zm00001d031591_P001	Maize	nucleus	31.7	24.48
VIT_04s0023g02820.t01	Wine grape	nucleus	33.04	24.18
Zm00001d047742_P001	Maize	nucleus	34.82	22.87

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:CCB51019	ProteinID:CCB51019.1	ncoils:Coil	UniProt:F6HF63
EMBL:FN595752	GO:GO:0000003	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009791	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983
GO:GO:0048316	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319
PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945
PANTHER:PTHR11945:SF257	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
InterPro:TT16-like	UniParc:UPI000210A722	ArrayExpress:VIT_01s0011g01560	EnsemblPlantsGene:VIT_01s0011g01560	EnsemblPlants:VIT_01s0011g01560.t01	:

Description

No Description!

Coordinates

chr1:+:1353271..1355959

Molecular Weight (calculated)

25837.8 Da

IEP (calculated)

8.673

GRAVY (calculated)

-0.755

Length

224 amino acids

Sequence
(BLAST)

001: MGRGKIAIRR IENNTNRQVT FSKRRGGLFK KAHELSVLCD AQIGLIIFSS TGKLSEYCSL PSSMEQIIRR YQRVTGTHIS KQDNREQLHN EITRMRNETH
101: NLQLSLQRYT GDDLSSIQFK DLEELEQQLE HSIKKVRARK IQEKQQVAAM EQQQLGIELK PVEEQQVMEQ FPFSGEEQPN SVLQLATLSP HFYPYRLQPT
201: HPNLQDLTLQ YPGFGSIGTT PTND

Best Arabidopsis Sequence Match ( AT5G23260.3 )
(BLAST)

001: MGRGKIEIKK IENQTARQVT FSKRRTGLIK KTRELSILCD AHIGLIVFSA TGKLSEFCSE QNRMPQLIDR YLHTNGLRLP DHHDDQEQLH HEMELLRRET
101: CNLELRLRPF HGHDLASIPP NELDGLERQL EHSVLKVRER KRRMLEEDNN NMYRWLHEHR AAMEFQQAGI DTKPGEYQQF IEQLQCYKPG EYQQFLEQQQ
201: QQPNSVLQLA TLPSEIDPTY NLQLAQPNLQ NDPTAQND

Arabidopsis Description

TT16K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT5G23260]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.