Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0011g01220.t01 | |
| VIT_14s0083g01050.t01 | |
| VIT_18s0001g01760.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G54340.1 | VIT_01s0011g01220.t01 | AT1G30950.1 | 18287201 |
| AT3G54340.1 | VIT_14s0083g01050.t01 | AT3G02310.1 | 15604664 |
| AT3G54340.1 | VIT_18s0001g01760.t01 | AT5G20240.1 | 15604664 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH61083 | Soybean | nucleus | 48.23 | 78.42 |
| KRH51760 | Soybean | nucleus | 70.35 | 70.04 |
| KRH66520 | Soybean | nucleus | 40.71 | 69.7 |
| KRH25650 | Soybean | nucleus | 40.71 | 69.7 |
| PGSC0003DMT400009510 | Potato | nucleus | 69.91 | 69.3 |
| KRH07712 | Soybean | nucleus | 40.27 | 68.94 |
| Solyc04g081000.2.1 | Tomato | nucleus | 69.03 | 68.42 |
| GSMUA_Achr9P20940_001 | Banana | nucleus | 29.65 | 65.69 |
| CDY69833 | Canola | nucleus | 47.35 | 60.45 |
| CDX76152 | Canola | nucleus | 58.85 | 59.38 |
| Bra014822.1-P | Field mustard | nucleus | 58.41 | 58.93 |
| CDY13200 | Canola | nucleus | 58.41 | 58.93 |
| GSMUA_Achr9P20950_001 | Banana | nucleus | 57.96 | 58.22 |
| Bra007067.1-P | Field mustard | nucleus | 58.85 | 57.33 |
| CDX73487 | Canola | nucleus | 58.85 | 57.33 |
| AT3G54340.1 | Thale cress | nucleus | 58.85 | 57.33 |
| TraesCS7B01G286600.2 | Wheat | nucleus | 56.19 | 55.46 |
| EER90370 | Sorghum | nucleus | 55.31 | 55.31 |
| TraesCS7D01G380300.1 | Wheat | nucleus | 55.31 | 55.07 |
| Os06t0712700-01 | Rice | nucleus | 54.42 | 54.91 |
| Zm00001d036425_P002 | Maize | nucleus | 53.98 | 53.74 |
| TraesCS7A01G383800.1 | Wheat | nucleus | 56.19 | 53.59 |
| VIT_04s0023g02820.t01 | Wine grape | nucleus | 65.93 | 48.69 |
| TraesCS6B01G159400.1 | Wheat | nucleus | 47.35 | 46.32 |
| TraesCS6D01G120900.1 | Wheat | nucleus | 48.67 | 46.03 |
| TraesCS6A01G131100.1 | Wheat | nucleus | 46.46 | 43.93 |
| HORVU7Hr1G091210.4 | Barley | nucleus, plastid | 45.13 | 42.86 |
| VIT_18s0001g01760.t01 | Wine grape | nucleus | 39.82 | 42.45 |
| VIT_01s0011g01560.t01 | Wine grape | nucleus | 33.19 | 33.48 |
| VIT_02s0025g02350.t01 | Wine grape | nucleus | 29.65 | 32.52 |
| VIT_10s0042g00820.t01 | Wine grape | nucleus | 32.3 | 30.93 |
Protein Annotations
| EntrezGene:100233029 | wikigene:100233029 | MapMan:15.5.14 | Gene3D:3.40.1810.10 | ProteinID:ABN71371 | ProteinID:ABN71371.1 |
| ProteinID:ACZ26526 | ProteinID:ACZ26526.1 | EntrezGene:AP3 | wikigene:AP3 | ProteinID:CBI19790 | ProteinID:CBI19790.3 |
| ncoils:Coil | UniProt:E0CPH4 | EMBL:EF418603 | EMBL:FN595227 | GO:GO:0000977 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 |
| EMBL:GU133632 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 |
| PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF219 | SMART:SM00432 | SUPFAM:SSF55455 | TIGR:TC54810 | InterPro:TF_Kbox | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI0000F1CD8A | ArrayExpress:VIT_18s0001g13460 | EnsemblPlantsGene:VIT_18s0001g13460 | EnsemblPlants:VIT_18s0001g13460.t01 | unigene:Vvi.5463 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr18:+:11506606..11512370
Molecular Weight (calculated)
26195.2 Da
IEP (calculated)
8.874
GRAVY (calculated)
-0.760
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MARGKIEIKR IENSTNRQVT YSKRRNGIFK KASELTVLCD AKVSIIMLSS TGKLHEYISP STTTKQIFDQ YQNTLGVDLW SYHYERMQEN LKKLKDVNKN
101: LRKEIRQRMG EHLSDLSVEE LRDLEQEMES SLKMVRDRKY QVINNQIETF KKKVRNVEQI HKNLLHEFDA RDRDQHYGLV DNGGDYESVL GFSNGSSPVF
201: ALSLQPNPPN DLHSGVGSDL TFTLLE
101: LRKEIRQRMG EHLSDLSVEE LRDLEQEMES SLKMVRDRKY QVINNQIETF KKKVRNVEQI HKNLLHEFDA RDRDQHYGLV DNGGDYESVL GFSNGSSPVF
201: ALSLQPNPPN DLHSGVGSDL TFTLLE
001: MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD ARVSIIMFSS SNKLHEYISP NTTTKEIVDL YQTISDVDVW ATQYERMQET KRKLLETNRN
101: LRTQIKQRLG ECLDELDIQE LRRLEDEMEN TFKLVRERKF KSLGNQIETT KKKNKSQQDI QKNLIHELEL RAEDPHYGLV DNGGDYDSVL GYQIEGSRAY
201: ALRFHQNHHH YYPNHGLHAP SASDIITFHL LE
101: LRTQIKQRLG ECLDELDIQE LRRLEDEMEN TFKLVRERKF KSLGNQIETT KKKNKSQQDI QKNLIHELEL RAEDPHYGLV DNGGDYDSVL GYQIEGSRAY
201: ALRFHQNHHH YYPNHGLHAP SASDIITFHL LE
Arabidopsis Description
AP3Floral homeotic protein APETALA 3 [Source:UniProtKB/Swiss-Prot;Acc:P35632]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.