Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0883100-01 | |
| Os05t0423400-01 | |
| Os06t0665400-01 | |
| Os08t0531700-01 | |
| Os09t0507200-01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER90370 | Sorghum | nucleus | 92.41 | 91.59 |
| Zm00001d036425_P002 | Maize | nucleus | 90.18 | 88.99 |
| TraesCS7B01G286600.2 | Wheat | nucleus | 90.62 | 88.65 |
| TraesCS7D01G380300.1 | Wheat | nucleus | 89.73 | 88.55 |
| TraesCS7A01G383800.1 | Wheat | nucleus | 90.18 | 85.23 |
| GSMUA_Achr9P20940_001 | Banana | nucleus | 33.04 | 72.55 |
| TraesCS6B01G159400.1 | Wheat | nucleus | 73.66 | 71.43 |
| TraesCS6D01G120900.1 | Wheat | nucleus | 75.89 | 71.13 |
| TraesCS6A01G131100.1 | Wheat | nucleus | 71.88 | 67.36 |
| KRH61083 | Soybean | nucleus | 39.73 | 64.03 |
| HORVU7Hr1G091210.4 | Barley | nucleus, plastid | 65.62 | 61.76 |
| KRH66520 | Soybean | nucleus | 32.59 | 55.3 |
| KRH25650 | Soybean | nucleus | 32.59 | 55.3 |
| KRH07712 | Soybean | nucleus | 32.14 | 54.55 |
| VIT_18s0001g13460.t01 | Wine grape | nucleus | 54.91 | 54.42 |
| CDY69833 | Canola | nucleus | 42.86 | 54.24 |
| KRH51760 | Soybean | nucleus | 52.68 | 51.98 |
| Solyc02g084630.2.1 | Tomato | nucleus | 51.79 | 51.56 |
| PGSC0003DMT400009510 | Potato | nucleus | 52.23 | 51.32 |
| PGSC0003DMT400009112 | Potato | nucleus | 51.34 | 51.11 |
| Solyc04g081000.2.1 | Tomato | nucleus | 51.34 | 50.44 |
| CDX76152 | Canola | nucleus | 47.77 | 47.77 |
| CDY13200 | Canola | nucleus | 47.32 | 47.32 |
| Bra014822.1-P | Field mustard | nucleus | 47.32 | 47.32 |
| CDX73487 | Canola | nucleus | 48.21 | 46.55 |
| AT3G54340.1 | Thale cress | nucleus | 48.21 | 46.55 |
| Bra007067.1-P | Field mustard | nucleus | 47.77 | 46.12 |
| KRH28746 | Soybean | nucleus | 46.43 | 44.44 |
| KRH76708 | Soybean | nucleus | 47.32 | 43.62 |
| VIT_04s0023g02820.t01 | Wine grape | nucleus | 56.7 | 41.5 |
| Os01t0883100-01 | Rice | nucleus | 35.71 | 38.28 |
| Os04t0614100-00 | Rice | nucleus | 29.91 | 37.64 |
| Os05t0423400-01 | Rice | nucleus | 34.38 | 35.81 |
| Os01t0726400-01 | Rice | nucleus | 29.46 | 33.67 |
| Os06t0667200-01 | Rice | nucleus | 30.36 | 30.77 |
| Os02t0170300-01 | Rice | nucleus | 34.38 | 29.62 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:4342047 | ProteinID:AAL18851.1 | EMBL:AB003323 | EMBL:AF077760 |
| EMBL:AK069317 | ProteinID:BAD54066.1 | ProteinID:BAD54565.1 | ProteinID:BAF20474.1 | ProteinID:BAS99468.1 | ncoils:Coil |
| GO:GO:0000003 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0010093 |
| GO:GO:0010097 | GO:GO:0030154 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | InterPro:MADS_MEF2-like | EnsemblPlantsGene:Os06g0712700 | EnsemblPlants:Os06t0712700-01 | PFAM:PF00319 | PFAM:PF01486 |
| PRINTS:PR00404 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF251 | UniProt:Q944S9 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000004D32C |
| RefSeq:XP_015641661.1 | SEG:seg | : | : | : | : |
Description
SUPERWOMAN 1Transcription factor, Development of lodicules and stamens (Os06t0712700-01)
Coordinates
chr6:-:30173627..30177996
Molecular Weight (calculated)
25465.3 Da
IEP (calculated)
8.628
GRAVY (calculated)
-0.662
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKIEIKR IENATNRQVT YSKRRTGIMK KARELTVLCD AQVAIIMFSS TGKYHEFCSP STDIKGIFDR YQQAIGTSLW IEQYENMQRT LSHLKDINRN
101: LRTEIRQRMG EDLDGLEFDE LRGLEQNVDA ALKEVRHRKY HVITTQTETY KKKVKHSYEA YETLQQELGL REEPAFGFVD NTGGGWDGGA GAGAAADMFA
201: FRVVPSQPNL HGMAYGGNHD LRLG
101: LRTEIRQRMG EDLDGLEFDE LRGLEQNVDA ALKEVRHRKY HVITTQTETY KKKVKHSYEA YETLQQELGL REEPAFGFVD NTGGGWDGGA GAGAAADMFA
201: FRVVPSQPNL HGMAYGGNHD LRLG
001: MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD ARVSIIMFSS SNKLHEYISP NTTTKEIVDL YQTISDVDVW ATQYERMQET KRKLLETNRN
101: LRTQIKQRLG ECLDELDIQE LRRLEDEMEN TFKLVRERKF KSLGNQIETT KKKNKSQQDI QKNLIHELEL RAEDPHYGLV DNGGDYDSVL GYQIEGSRAY
201: ALRFHQNHHH YYPNHGLHAP SASDIITFHL LE
101: LRTQIKQRLG ECLDELDIQE LRRLEDEMEN TFKLVRERKF KSLGNQIETT KKKNKSQQDI QKNLIHELEL RAEDPHYGLV DNGGDYDSVL GYQIEGSRAY
201: ALRFHQNHHH YYPNHGLHAP SASDIITFHL LE
Arabidopsis Description
AP3Floral homeotic protein APETALA 3 [Source:UniProtKB/Swiss-Prot;Acc:P35632]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.