CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76708	Soybean	nucleus	94.87	91.36
GSMUA_Achr9P20940_001	Banana	nucleus	26.92	61.76
KRH61083	Soybean	nucleus	36.32	61.15
Solyc02g084630.2.1	Tomato	nucleus	57.27	59.56
PGSC0003DMT400009112	Potato	nucleus	57.27	59.56
KRH07712	Soybean	nucleus	29.91	53.03
KRH25650	Soybean	nucleus	29.49	52.27
KRH66520	Soybean	nucleus	29.49	52.27
GSMUA_Achr9P20950_001	Banana	nucleus	49.15	51.11
KRH51760	Soybean	nucleus	47.44	48.9
EER90370	Sorghum	nucleus	46.15	47.79
Zm00001d036425_P002	Maize	nucleus	45.73	47.14
VIT_04s0023g02820.t01	Wine grape	nucleus	61.54	47.06
Os06t0712700-01	Rice	nucleus	44.44	46.43
TraesCS7B01G286600.2	Wheat	nucleus	44.87	45.85
TraesCS7D01G380300.1	Wheat	nucleus	44.44	45.81
TraesCS7A01G383800.1	Wheat	nucleus	44.87	44.3
KRH53304	Soybean	nucleus	32.91	42.54
KRH64611	Soybean	nucleus	32.48	41.99
TraesCS6B01G159400.1	Wheat	nucleus	39.74	40.26
TraesCS6D01G120900.1	Wheat	nucleus	39.74	38.91
KRH16433	Soybean	nucleus	34.19	38.46
KRH18034	Soybean	nucleus	33.76	37.98
TraesCS6A01G131100.1	Wheat	nucleus	38.03	37.24
HORVU7Hr1G091210.4	Barley	nucleus, plastid	36.75	36.13
KRG89112	Soybean	nucleus	31.62	30.2
KRH40895	Soybean	nucleus	31.2	29.92

Protein Annotations

EntrezGene:100791963	MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:ACUP02006762	ncoils:Coil	EnsemblPlantsGene:GLYMA_11G073700
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	UniProt:I1LHY1	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879
EnsemblPlants:KRH28746	ProteinID:KRH28746	ProteinID:KRH28746.1	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486
PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF251
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000233D820
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:5499978..5503048

Molecular Weight (calculated)

27356.1 Da

IEP (calculated)

9.567

GRAVY (calculated)

-0.705

Length

234 amino acids

Sequence
(BLAST)

001: MGRGKIEIKL IENPTNRQVT YSKRRNGIFK KAHELSVLCD AKVSLIMFSK NNKMHEYISP GLTTKRIIDQ YQKTLGDIDL WRSHYEKMLE NLKKLIDINN
101: KLRRQIRHRI GEGLDMDDMS FQQLRTLEED LVSSIGKIRE RKFHVIKTRT DTCRKKVKSL EQMNRDLLFE LKEKCAIHPQ FILHDEGDEE SAVALANGAS
201: TLYAFCHQHH SHLNLPSHHS HGEEPFKTDD LRLA

Best Arabidopsis Sequence Match ( AT3G54340.1 )
(BLAST)

001: MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD ARVSIIMFSS SNKLHEYISP NTTTKEIVDL YQTISDVDVW ATQYERMQET KRKLLETNRN
101: LRTQIKQRLG ECLDELDIQE LRRLEDEMEN TFKLVRERKF KSLGNQIETT KKKNKSQQDI QKNLIHELEL RAEDPHYGLV DNGGDYDSVL GYQIEGSRAY
201: ALRFHQNHHH YYPNHGLHAP SASDIITFHL LE

Arabidopsis Description

AP3Floral homeotic protein APETALA 3 [Source:UniProtKB/Swiss-Prot;Acc:P35632]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.