CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40895	Soybean	nucleus	93.47	93.85
VIT_10s0042g00820.t01	Wine grape	nucleus	54.29	56.36
CDY40800	Canola	nucleus	48.57	49.17
CDY45758	Canola	nucleus	48.16	48.76
Bra013028.1-P	Field mustard	nucleus	47.76	48.75
CDY02217	Canola	nucleus	47.76	48.75
Bra029365.1-P	Field mustard	nucleus	47.76	48.35
CDY69354	Canola	nucleus	47.76	48.35
Solyc11g005120.1.1	Tomato	nucleus	44.49	45.8
CDX87180	Canola	nucleus	45.31	45.31
KRH61083	Soybean	nucleus	25.31	44.6
AT5G23260.4	Thale cress	nucleus	47.76	43.66
GSMUA_Achr3P23580_001	Banana	nucleus	42.04	42.74
GSMUA_Achr2P02660_001	Banana	nucleus	41.63	42.5
KRH66520	Soybean	nucleus	22.04	40.91
KRH07712	Soybean	nucleus	22.04	40.91
KRH25650	Soybean	nucleus	22.04	40.91
KRH53304	Soybean	nucleus	29.39	39.78
TraesCS6D01G147400.1	Wheat	nucleus	40.41	39.29
TraesCS6A01G158100.1	Wheat	nucleus	40.41	39.29
TraesCS6B01G186700.1	Wheat	nucleus	40.41	39.13
Os02t0170300-01	Rice	nucleus	41.22	38.85
KRH16433	Soybean	nucleus	32.65	38.46
HORVU6Hr1G032220.7	Barley	nucleus	40.82	38.46
Zm00001d015381_P001	Maize	nucleus	40.82	38.46
KRH64611	Soybean	nucleus	28.16	38.12
Os04t0614100-00	Rice	nucleus	27.35	37.64
EES06346	Sorghum	nucleus	39.59	37.6
Zm00001d018587_P001	Maize	nucleus	25.71	37.28
KRH18034	Soybean	nucleus	31.02	36.54
CDY16841	Canola	nucleus	45.71	35.22
KRH51760	Soybean	nucleus	32.24	34.8
Bra026507.1-P	Field mustard	nucleus	44.08	34.5
TraesCS2B01G440900.1	Wheat	nucleus	34.29	33.2
TraesCS3D01G102700.1	Wheat	nucleus	30.61	32.75
OQU82318	Sorghum	nucleus	33.88	32.3
Zm00001d018767_P001	Maize	nucleus	33.06	31.76
Os06t0667200-01	Rice	nucleus	28.57	31.67
KRH28746	Soybean	nucleus	30.2	31.62
TraesCS1D01G441200.1	Wheat	nucleus	24.49	31.58
Zm00001d003168_P001	Maize	nucleus	30.61	31.12
TraesCS3A01G090900.1	Wheat	nucleus	28.16	30.4
TraesCS2D01G418800.2	Wheat	nucleus	33.47	30.26
TraesCS3A01G090300.1	Wheat	nucleus	27.76	30.22
TraesCS2A01G422400.2	Wheat	nucleus	33.47	30.15
HORVU2Hr1G098930.3	Barley	nucleus	33.47	29.71
KXG20558	Sorghum	nucleus	28.98	29.71
TraesCS3D01G090300.1	Wheat	nucleus	26.53	29.68
KRH76708	Soybean	nucleus	29.39	29.63
Zm00001d041587_P001	Maize	nucleus	16.33	29.63
TraesCS7A01G475000.1	Wheat	nucleus	26.94	29.33
TraesCS3B01G105700.2	Wheat	nucleus	26.94	29.07
Zm00001d033701_P001	Maize	nucleus	25.71	26.03
Zm00001d020114_P001	Maize	nucleus	23.67	25.78
TraesCS7B01G377700.1	Wheat	nucleus	22.86	24.78
HORVU7Hr1G108280.4	Barley	nucleus, plastid	26.53	24.34
HORVU7Hr1G108410.1	Barley	nucleus	20.82	23.39
Zm00001d031591_P001	Maize	nucleus	26.94	22.76
Zm00001d047742_P001	Maize	nucleus	28.16	20.23

Protein Annotations

EntrezGene:100783876	MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:ACUP02012187	ncoils:Coil	EnsemblPlantsGene:GLYMA_20G001900
GO:GO:0000003	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009791	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	GO:GO:0048316
InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:K7N0I9	EnsemblPlants:KRG89112	ProteinID:KRG89112
ProteinID:KRG89112.1	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF257	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	InterPro:TT16-like	UniParc:UPI000296AD85	SEG:seg	:

Description

hypothetical protein

Coordinates

chr20:-:206068..209996

Molecular Weight (calculated)

28918.6 Da

IEP (calculated)

7.028

GRAVY (calculated)

-0.784

Length

245 amino acids

Sequence
(BLAST)

001: MGRGKIEIKR IENTTTRQVT FSKRRGGLLK KTKELSVLCD AKIGIIIFSS TGKMREWCTE PFRMEQIIEQ YQISKGTPIA ERGHDHPREE FFHNMAMLRQ
101: QTIRLELEIQ RYLGEDMRGL QYEDLTKLEQ ELENSVARIR NRQNELLQQQ MENLRRKERI LEEENNHFSN WEHHQAVLEF QKAAATVEAS KPMYVMDHFS
201: FFEEQPAGSI LQLASPMLPH FHPYLQLAQP NIQDSVRGQS YNNEQ

Best Arabidopsis Sequence Match ( AT5G23260.4 )
(BLAST)

001: MNIEEEGATH KRKKREMGRG KIEIKKIENQ TARQVTFSKR RTGLIKKTRE LSILCDAHIG LIVFSATGKL SEFCSEQNRM PQLIDRYLHT NGLRLPDHHD
101: DQEQLHHEME LLRRETCNLE LRLRPFHGHD LASIPPNELD GLERQLEHSV LKVRERKNEL MQQQLENLSR KRRMLEEDNN NMYRWLHEHR AAMEFQQAGI
201: DTKPGEYQQF IEQLQCYKPG EYQQFLEQQQ QQPNSVLQLA TLPSEIDPTY NLQLAQPNLQ NDPTAQND

Arabidopsis Description

TT16K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT5G23260]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.