Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G147400.1 | Wheat | nucleus | 95.0 | 98.02 |
| TraesCS6A01G158100.1 | Wheat | nucleus | 95.0 | 98.02 |
| TraesCS6B01G186700.1 | Wheat | nucleus | 94.62 | 97.23 |
| Os02t0170300-01 | Rice | nucleus | 80.0 | 80.0 |
| Zm00001d015381_P001 | Maize | nucleus | 76.54 | 76.54 |
| EES06346 | Sorghum | nucleus | 74.23 | 74.81 |
| GSMUA_Achr3P23580_001 | Banana | nucleus | 56.15 | 60.58 |
| GSMUA_Achr2P02660_001 | Banana | nucleus | 55.38 | 60.0 |
| VIT_10s0042g00820.t01 | Wine grape | nucleus | 43.85 | 48.31 |
| VIT_01s0011g01560.t01 | Wine grape | nucleus | 40.38 | 46.88 |
| Bra013028.1-P | Field mustard | nucleus | 38.85 | 42.08 |
| CDY02217 | Canola | nucleus | 38.85 | 42.08 |
| CDY45758 | Canola | nucleus | 38.85 | 41.74 |
| KRH40895 | Soybean | nucleus | 38.46 | 40.98 |
| KRG89112 | Soybean | nucleus | 38.46 | 40.82 |
| HORVU2Hr1G098930.3 | Barley | nucleus | 42.31 | 39.86 |
| VIT_02s0025g02350.t01 | Wine grape | nucleus | 31.54 | 39.81 |
| CDX87180 | Canola | nucleus | 37.31 | 39.59 |
| Solyc11g005120.1.1 | Tomato | nucleus | 35.0 | 38.24 |
| Bra029365.1-P | Field mustard | nucleus | 35.0 | 37.6 |
| CDY69354 | Canola | nucleus | 35.0 | 37.6 |
| CDY40800 | Canola | nucleus | 34.62 | 37.19 |
| HORVU1Hr1G063620.1 | Barley | nucleus | 31.15 | 36.32 |
| HORVU7Hr1G108410.1 | Barley | nucleus | 29.23 | 34.86 |
| AT5G23260.4 | Thale cress | nucleus | 35.77 | 34.7 |
| HORVU7Hr1G108280.4 | Barley | nucleus, plastid | 34.23 | 33.33 |
| CDY16841 | Canola | nucleus | 38.46 | 31.45 |
| Bra026507.1-P | Field mustard | nucleus | 37.69 | 31.31 |
| HORVU3Hr1G091000.8 | Barley | nucleus, plastid | 30.38 | 28.94 |
| HORVU7Hr1G091210.4 | Barley | nucleus, plastid | 23.46 | 25.63 |
| HORVU3Hr1G068900.3 | Barley | nucleus, plastid | 25.0 | 22.18 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | UniProt:A0A287TTJ5 | ncoils:Coil | GO:GO:0000003 | GO:GO:0000977 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005975 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008219 |
| GO:GO:0009058 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0019252 | GO:GO:0043068 | GO:GO:0045944 |
| GO:GO:0046983 | GO:GO:0048316 | EnsemblPlantsGene:HORVU6Hr1G032220 | EnsemblPlants:HORVU6Hr1G032220.7 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 |
| PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF259 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000B4755CC | SEG:seg | : |
Description
No Description!
Coordinates
chrchr6H:+:139881813..139884051
Molecular Weight (calculated)
29340.0 Da
IEP (calculated)
6.956
GRAVY (calculated)
-0.480
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKIEIKR IENATNRQVT FSKRRGGLLK KANELAVLCD ARVGVVIFSS TGRMFEYSSP ASSLRDLIEQ YQNTTNSQFE EINHDQQIFV EMTRMRNEME
101: KLEDGIRRYT GDDLSSLSLV DVNDIEQQLE FSVAKVRARK HQLLNQQLDN LRRKEHILED QNSFLCRMLR ALVVQISENQ HGGDGKMAVM PPVLSMLTPA
201: FPATPYYTGE ESSSTALQLT SPQLQLHAAE AAGFRLQPTQ PNLQDPACSS LHAGHGLHLW
101: KLEDGIRRYT GDDLSSLSLV DVNDIEQQLE FSVAKVRARK HQLLNQQLDN LRRKEHILED QNSFLCRMLR ALVVQISENQ HGGDGKMAVM PPVLSMLTPA
201: FPATPYYTGE ESSSTALQLT SPQLQLHAAE AAGFRLQPTQ PNLQDPACSS LHAGHGLHLW
001: MGRGKIEIKK IENQTARQVT FSKRRTGLIK KTRELSILCD AHIGLIVFSA TGKLSEFCSE QNRMPQLIDR YLHTNGLRLP DHHDDQEQLH HEMELLRRET
101: CNLELRLRPF HGHDLASIPP NELDGLERQL EHSVLKVRER KNELMQQQLE NLSRKRRMLE EDNNNMYRWL HEHRAAMEFQ QAGIDTKPGE YQQFIEQLQC
201: YKPGEYQQFL EQQQQQPNSV LQLATLPSEI DPTYNLQLAQ PNLQNDPTAQ ND
101: CNLELRLRPF HGHDLASIPP NELDGLERQL EHSVLKVRER KNELMQQQLE NLSRKRRMLE EDNNNMYRWL HEHRAAMEFQ QAGIDTKPGE YQQFIEQLQC
201: YKPGEYQQFL EQQQQQPNSV LQLATLPSEI DPTYNLQLAQ PNLQNDPTAQ ND
Arabidopsis Description
TT16K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT5G23260]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.