CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026507.1-P	Field mustard	nucleus	98.43	100.0
CDX87180	Canola	nucleus	73.58	95.51
CDY45758	Canola	nucleus	61.95	81.41
CDY02217	Canola	nucleus	60.38	80.0
CDY40800	Canola	nucleus	58.8	77.27
CDY69354	Canola	nucleus	58.49	76.86
AT5G23260.4	Thale cress	nucleus	61.01	72.39
VIT_10s0042g00820.t01	Wine grape	nucleus	39.31	52.97
VIT_01s0011g01560.t01	Wine grape	nucleus	35.53	50.45
Solyc11g005120.1.1	Tomato	nucleus	35.85	47.9
KRH40895	Soybean	nucleus	35.85	46.72
KRG89112	Soybean	nucleus	35.22	45.71
GSMUA_Achr3P23580_001	Banana	nucleus	34.59	45.64
VIT_02s0025g02350.t01	Wine grape	nucleus	29.25	45.15
GSMUA_Achr2P02660_001	Banana	nucleus	33.65	44.58
CDY35823	Canola	nucleus	20.13	41.56
CDX92479	Canola	nucleus	19.81	40.91
Os04t0614100-00	Rice	nucleus	22.64	40.45
Zm00001d018587_P001	Maize	nucleus	21.07	39.65
TraesCS6A01G158100.1	Wheat	nucleus	31.13	39.29
TraesCS6D01G147400.1	Wheat	nucleus	31.13	39.29
Zm00001d015381_P001	Maize	nucleus	32.08	39.23
TraesCS6B01G186700.1	Wheat	nucleus	31.13	39.13
CDX88846	Canola	nucleus	24.84	38.92
CDY45099	Canola	nucleus	24.84	38.92
CDY60377	Canola	nucleus	24.84	38.92
EES06346	Sorghum	nucleus	31.45	38.76
HORVU6Hr1G032220.7	Barley	nucleus	31.45	38.46
Os02t0170300-01	Rice	nucleus	31.13	38.08
TraesCS3D01G102700.1	Wheat	nucleus	26.1	36.24
TraesCS3D01G090300.1	Wheat	nucleus	24.84	36.07
TraesCS2B01G440900.1	Wheat	nucleus	28.3	35.57
TraesCS7A01G475000.1	Wheat	nucleus	24.84	35.11
CDY69833	Canola	nucleus	19.5	35.03
TraesCS3A01G090900.1	Wheat	nucleus	24.84	34.8
TraesCS1D01G441200.1	Wheat	nucleus	20.75	34.74
KXG20558	Sorghum	nucleus	26.1	34.73
TraesCS3A01G090300.1	Wheat	nucleus	24.53	34.67
OQU82318	Sorghum	nucleus	27.99	34.63
HORVU2Hr1G098930.3	Barley	nucleus	29.87	34.42
Os06t0667200-01	Rice	nucleus	23.9	34.39
TraesCS3B01G105700.2	Wheat	nucleus	24.53	34.36
Zm00001d018767_P001	Maize	nucleus	26.73	33.33
TraesCS2D01G418800.2	Wheat	nucleus	27.99	32.84
Zm00001d003168_P001	Maize	nucleus	24.84	32.78
TraesCS2A01G422400.2	Wheat	nucleus	27.99	32.72
Zm00001d041587_P001	Maize	nucleus	13.52	31.85
TraesCS7B01G377700.1	Wheat	nucleus	22.33	31.42
HORVU7Hr1G108280.4	Barley	nucleus, plastid	26.1	31.09
HORVU7Hr1G108410.1	Barley	nucleus	21.07	30.73
Zm00001d033701_P001	Maize	nucleus	22.33	29.34
CDX73487	Canola	nucleus	21.38	29.31
CDX76152	Canola	nucleus	20.44	29.02
CDY13200	Canola	nucleus	20.13	28.57
Zm00001d020114_P001	Maize	nucleus	19.18	27.11
Zm00001d031591_P001	Maize	nucleus	24.21	26.55
Zm00001d047742_P001	Maize	nucleus	23.58	21.99

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078FV43	UniProt:A0A078FV43	EnsemblPlants:CDY16841	ProteinID:CDY16841
ProteinID:CDY16841.1	ncoils:Coil	GO:GO:0000003	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009791	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	GO:GO:0048316	EnsemblPlantsGene:GSBRNA2T00094727001	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF257	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	InterPro:TT16-like	UniParc:UPI0004EE55A3	SEG:seg	:

Description

BnaA09g05410DBnaA09g05410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FV43]

Coordinates

chrLK032067:+:622319..626318

Molecular Weight (calculated)

37329.4 Da

IEP (calculated)

9.655

GRAVY (calculated)

-1.042

Length

318 amino acids

Sequence
(BLAST)

001: MNSLQGYYGL KPTNRRASKE SRSLVDAVIS GFNQSSKPSK EVRCDKPMRD ANNLKLDFSL RENRNSSSRR KRKEMGRGKI EIKKIENKTS RQVTFSKRRN
101: GLIKKTRELS VLCDAHIGLI VFSTTGKLTQ YCSEHSNMPQ LIDRYLTKEG LQLPDLNDDR DDLRHEIEIL RRETCKLELR LRPYHGHDLA SIPPHELEGL
201: EQQLEHSVRK VRERKKELLQ QQLGNLSRKK RMLEDDNNNM YRWLHDEHRT GVEFQQAGIE TKPMEYQQFL EQVQYYNDHH QQQSSVLQLP TLPSEIDLSY
301: HLQLAQPNLQ NDPTTKVD

Best Arabidopsis Sequence Match ( AT5G23260.4 )
(BLAST)

001: MNIEEEGATH KRKKREMGRG KIEIKKIENQ TARQVTFSKR RTGLIKKTRE LSILCDAHIG LIVFSATGKL SEFCSEQNRM PQLIDRYLHT NGLRLPDHHD
101: DQEQLHHEME LLRRETCNLE LRLRPFHGHD LASIPPNELD GLERQLEHSV LKVRERKNEL MQQQLENLSR KRRMLEEDNN NMYRWLHEHR AAMEFQQAGI
201: DTKPGEYQQF IEQLQCYKPG EYQQFLEQQQ QQPNSVLQLA TLPSEIDPTY NLQLAQPNLQ NDPTAQND

Arabidopsis Description

TT16K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT5G23260]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.