CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX88846
CDX92479
CDY12448
CDY34718
CDY35823
CDY43239
CDY45099
CDY52183
CDY57524
CDY60377

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54340.1	CDY12448	AT1G30950.1	18287201
AT3G54340.1	CDY52183	AT1G30950.1	18287201
AT3G54340.1	CDY34718	AT3G02310.1	15604664
AT3G54340.1	CDY43239	AT3G02310.1	15604664
AT3G54340.1	CDY57524	AT3G02310.1	15604664
AT3G54340.1	CDX88846	AT5G20240.1	15604664
AT3G54340.1	CDX92479	AT5G20240.1	15604664
AT3G54340.1	CDY35823	AT5G20240.1	15604664
AT3G54340.1	CDY45099	AT5G20240.1	15604664
AT3G54340.1	CDY60377	AT5G20240.1	15604664

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007067.1-P	Field mustard	nucleus	99.57	99.57
CDX76152	Canola	nucleus	94.83	98.21
CDY13200	Canola	nucleus	93.53	96.88
AT3G54340.1	Thale cress	nucleus	94.4	94.4
CDY69833	Canola	nucleus	68.53	89.83
KRH61083	Soybean	nucleus	40.95	68.35
GSMUA_Achr9P20940_001	Banana	nucleus	26.29	59.8
Solyc04g081000.2.1	Tomato	nucleus	58.19	59.21
VIT_18s0001g13460.t01	Wine grape	nucleus	57.33	58.85
PGSC0003DMT400009510	Potato	nucleus	57.33	58.33
KRH66520	Soybean	nucleus	33.19	58.33
KRH25650	Soybean	nucleus	33.19	58.33
KRH07712	Soybean	nucleus	33.19	58.33
KRH51760	Soybean	nucleus	53.02	54.19
TraesCS7B01G286600.2	Wheat	nucleus	49.14	49.78
TraesCS7D01G380300.1	Wheat	nucleus	48.71	49.78
EER90370	Sorghum	nucleus	48.28	49.56
Zm00001d036425_P002	Maize	nucleus	48.28	49.34
GSMUA_Achr9P20950_001	Banana	nucleus	47.84	49.33
Os06t0712700-01	Rice	nucleus	46.55	48.21
TraesCS7A01G383800.1	Wheat	nucleus	49.14	48.1
TraesCS6B01G159400.1	Wheat	nucleus	42.24	42.42
TraesCS6D01G120900.1	Wheat	nucleus	42.67	41.42
TraesCS6A01G131100.1	Wheat	nucleus	41.38	40.17
CDY35823	Canola	nucleus	24.57	37.01
HORVU7Hr1G091210.4	Barley	nucleus, plastid	37.93	36.97
CDX92479	Canola	nucleus	24.14	36.36
CDY60377	Canola	nucleus	26.72	30.54
CDX88846	Canola	nucleus	26.72	30.54
CDY45099	Canola	nucleus	26.29	30.05
CDY45758	Canola	nucleus	30.17	28.93
CDY02217	Canola	nucleus	29.74	28.75
CDY69354	Canola	nucleus	28.88	27.69
CDY40800	Canola	nucleus	28.45	27.27
CDX87180	Canola	nucleus	28.45	26.94
CDY16841	Canola	nucleus	29.31	21.38

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078C9F0	EnsemblPlants:CDX73487	ProteinID:CDX73487	ProteinID:CDX73487.1
ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00109002001	InterPro:IPR002100	InterPro:IPR002487
InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350
PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF219	SMART:SM00432	SUPFAM:SSF55455
InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0003D89958	SEG:seg	:

Description

BnaC08g25160D

Coordinates

chrLK031799:+:679124..681418

Molecular Weight (calculated)

27275.4 Da

IEP (calculated)

8.953

GRAVY (calculated)

-0.856

Length

232 amino acids

Sequence
(BLAST)

001: MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD ARVSIIMFSS SNKLHEFISP NTTTKEIIDL YQTVSDVDVW SAHYERMQET KRKLLETNRK
101: LRTQIKQRLG ECLDELDIQE LRSLEEEMEN TFKLVRERKF KSLGNQIETT KKKNKSQQDI QKNLIHELEL RAEDPHYGLV DNGGDYDSVL GYQIEGSRAY
201: ALRYHQNQHH HYPNHALHAP SASDIITFHL LE

Best Arabidopsis Sequence Match ( AT3G54340.1 )
(BLAST)

001: MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD ARVSIIMFSS SNKLHEYISP NTTTKEIVDL YQTISDVDVW ATQYERMQET KRKLLETNRN
101: LRTQIKQRLG ECLDELDIQE LRRLEDEMEN TFKLVRERKF KSLGNQIETT KKKNKSQQDI QKNLIHELEL RAEDPHYGLV DNGGDYDSVL GYQIEGSRAY
201: ALRFHQNHHH YYPNHGLHAP SASDIITFHL LE

Arabidopsis Description

AP3Floral homeotic protein APETALA 3 [Source:UniProtKB/Swiss-Prot;Acc:P35632]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.