CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02217	Canola	nucleus	96.28	97.08
CDY69354	Canola	nucleus	82.64	82.64
CDY40800	Canola	nucleus	82.64	82.64
CDX87180	Canola	nucleus	80.58	79.59
AT5G23260.4	Thale cress	nucleus	82.23	74.25
CDY16841	Canola	nucleus	81.41	61.95
VIT_10s0042g00820.t01	Wine grape	nucleus	56.61	58.05
VIT_01s0011g01560.t01	Wine grape	nucleus	50.83	54.91
Solyc11g005120.1.1	Tomato	nucleus	50.0	50.84
KRH40895	Soybean	nucleus	49.17	48.77
KRG89112	Soybean	nucleus	48.76	48.16
GSMUA_Achr3P23580_001	Banana	nucleus	47.52	47.72
VIT_02s0025g02350.t01	Wine grape	nucleus	39.26	46.12
GSMUA_Achr2P02660_001	Banana	nucleus	43.39	43.75
CDY35823	Canola	nucleus	26.86	42.21
Os04t0614100-00	Rice	nucleus	30.99	42.13
CDX92479	Canola	nucleus	26.45	41.56
Zm00001d018587_P001	Maize	nucleus	28.51	40.83
Zm00001d015381_P001	Maize	nucleus	42.98	40.0
EES06346	Sorghum	nucleus	42.15	39.53
CDY45099	Canola	nucleus	33.06	39.41
TraesCS6A01G158100.1	Wheat	nucleus	40.91	39.29
TraesCS6D01G147400.1	Wheat	nucleus	40.91	39.29
TraesCS6B01G186700.1	Wheat	nucleus	40.91	39.13
CDY60377	Canola	nucleus	32.64	38.92
CDX88846	Canola	nucleus	32.64	38.92
HORVU6Hr1G032220.7	Barley	nucleus	41.74	38.85
Os02t0170300-01	Rice	nucleus	41.32	38.46
Os06t0667200-01	Rice	nucleus	33.47	36.65
CDY69833	Canola	nucleus	26.45	36.16
TraesCS3D01G102700.1	Wheat	nucleus	33.88	35.81
TraesCS2B01G440900.1	Wheat	nucleus	37.19	35.57
OQU82318	Sorghum	nucleus	37.6	35.41
TraesCS1D01G441200.1	Wheat	nucleus	27.69	35.26
TraesCS3A01G090900.1	Wheat	nucleus	33.06	35.24
TraesCS3D01G090300.1	Wheat	nucleus	31.82	35.16
TraesCS3A01G090300.1	Wheat	nucleus	32.64	35.11
TraesCS3B01G105700.2	Wheat	nucleus	32.64	34.8
KXG20558	Sorghum	nucleus	33.88	34.31
TraesCS7A01G475000.1	Wheat	nucleus	31.82	34.22
Zm00001d018767_P001	Maize	nucleus	35.95	34.12
Zm00001d003168_P001	Maize	nucleus	33.47	33.61
HORVU2Hr1G098930.3	Barley	nucleus	37.6	32.97
TraesCS2D01G418800.2	Wheat	nucleus	36.78	32.84
TraesCS2A01G422400.2	Wheat	nucleus	36.78	32.72
HORVU7Hr1G108280.4	Barley	nucleus, plastid	33.47	30.34
HORVU7Hr1G108410.1	Barley	nucleus	27.27	30.28
CDX73487	Canola	nucleus	28.93	30.17
TraesCS7B01G377700.1	Wheat	nucleus	28.1	30.09
CDX76152	Canola	nucleus	27.69	29.91
Zm00001d041587_P001	Maize	nucleus	16.53	29.63
CDY13200	Canola	nucleus	27.27	29.46
Zm00001d033701_P001	Maize	nucleus	29.34	29.34
Zm00001d031591_P001	Maize	nucleus	31.82	26.55
Zm00001d020114_P001	Maize	nucleus	24.38	26.22
Zm00001d047742_P001	Maize	nucleus	31.82	22.58

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:ADV03947.1	ProteinID:AFI71422.1	GO:B6RFA3	UniProt:B6RFA3
unigene:Bna.28263	EnsemblPlants:CDY45758	ProteinID:CDY45758	ProteinID:CDY45758.1	ncoils:Coil	GO:GO:0000003
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009791	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	GO:GO:0048316	EnsemblPlantsGene:GSBRNA2T00082681001
InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486
PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF257
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	InterPro:TT16-like
UniParc:UPI00018349F8	SEG:seg	:	:	:	:

Description

BnaC02g42240DBnaC02g42240D protein [Source:UniProtKB/TrEMBL;Acc:B6RFA3]

Coordinates

chrLK032635:+:184506..187196

Molecular Weight (calculated)

28569.9 Da

IEP (calculated)

6.915

GRAVY (calculated)

-0.973

Length

242 amino acids

Sequence
(BLAST)

001: MGRGKIEIKR IENRTSRQVT FSKRRSGLIK KTHELSVLCD AHIGLIVFSA TGKLTEYCSD PSKMPQLIER YLQTNGLRLP DPNDGQEELY QEIEVLRRET
101: CKLELRLRPY HGHDLASIPP HELDALEQQL EHSVLKVRER KNELLQQQLE NLSRKRRMLE DDNKNMYRWL HEHRTAMEFQ QAGIETKPGE YQQFLEQVQY
201: YNDHHQQQQQ QPNSVLQLAT LPSEIDPNYH LQLAQPNLQN DN

Best Arabidopsis Sequence Match ( AT5G23260.4 )
(BLAST)

001: MNIEEEGATH KRKKREMGRG KIEIKKIENQ TARQVTFSKR RTGLIKKTRE LSILCDAHIG LIVFSATGKL SEFCSEQNRM PQLIDRYLHT NGLRLPDHHD
101: DQEQLHHEME LLRRETCNLE LRLRPFHGHD LASIPPNELD GLERQLEHSV LKVRERKNEL MQQQLENLSR KRRMLEEDNN NMYRWLHEHR AAMEFQQAGI
201: DTKPGEYQQF IEQLQCYKPG EYQQFLEQQQ QQPNSVLQLA TLPSEIDPTY NLQLAQPNLQ NDPTAQND

Arabidopsis Description

TT16K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT5G23260]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.