Factsheet for Zm00001d018587_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0614100-00	Rice	nucleus	73.37	69.66
Zm00001d018767_P001	Maize	nucleus	93.49	61.96
OQU82318	Sorghum	nucleus	91.72	60.31
Zm00001d003168_P001	Maize	nucleus	85.21	59.75
Zm00001d033701_P001	Maize	nucleus	79.88	55.79
TraesCS2B01G440900.1	Wheat	nucleus	76.92	51.38
TraesCS2D01G418800.2	Wheat	nucleus	76.33	47.6
TraesCS2A01G422400.2	Wheat	nucleus	76.33	47.43
Zm00001d031591_P001	Maize	nucleus	79.88	46.55
HORVU2Hr1G098930.3	Barley	nucleus	75.15	46.01
Zm00001d020114_P001	Maize	nucleus	54.44	40.89
Zm00001d047742_P001	Maize	nucleus	82.25	40.76
GSMUA_Achr2P02660_001	Banana	nucleus	50.89	35.83
GSMUA_Achr3P23580_001	Banana	nucleus	50.89	35.68
VIT_10s0042g00820.t01	Wine grape	nucleus	44.97	32.2
Zm00001d015381_P001	Maize	nucleus	49.11	31.92
VIT_02s0025g02350.t01	Wine grape	nucleus	37.87	31.07
VIT_01s0011g01560.t01	Wine grape	nucleus	40.83	30.8
Zm00001d041587_P001	Maize	nucleus	23.67	29.63
CDY02217	Canola	nucleus	40.83	28.75
Bra013028.1-P	Field mustard	nucleus	40.83	28.75
CDY45758	Canola	nucleus	40.83	28.51
Solyc11g005120.1.1	Tomato	nucleus	39.65	28.15
Zm00001d036425_P002	Maize	nucleus	37.28	27.75
CDX87180	Canola	nucleus	39.65	27.35
CDY40800	Canola	nucleus	39.05	27.27
KRH40895	Soybean	nucleus	38.46	26.64
CDY69354	Canola	nucleus	37.87	26.45
Bra029365.1-P	Field mustard	nucleus	37.87	26.45
Zm00001d011748_P001	Maize	nucleus	30.77	26.4
AT5G23260.4	Thale cress	nucleus	40.83	25.75
KRG89112	Soybean	nucleus	37.28	25.71
Zm00001d010232_P001	Maize	nucleus	31.95	25.47
Zm00001d042618_P001	Maize	nucleus	32.54	24.44
CDY16841	Canola	nucleus	39.65	21.07
Bra026507.1-P	Field mustard	nucleus	37.87	20.45
Zm00001d010233_P004	Maize	nucleus	30.77	20.31
Zm00001d043589_P002	Maize	plastid	29.59	18.18

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A1D6HQG7	ProteinID:AQK76514.1	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486
PRINTS:PR00404	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF210	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000844DA2A	EnsemblPlantsGene:Zm00001d018587
EnsemblPlants:Zm00001d018587_P001	EnsemblPlants:Zm00001d018587_T001	:	:	:	:

Description

MADS-transcription factor 20Protein TRANSPARENT TESTA 16

Coordinates

chr5:-:223789445..223791111

Molecular Weight (calculated)

19971.4 Da

IEP (calculated)

9.059

GRAVY (calculated)

-0.505

Length

169 amino acids

Sequence
(BLAST)

001: MGHGKVELKK IENPTNRQVT FSKRRMGLFK KANEVSILCD AQIRVIIFSG SGRMYEYSSP PWRIASVFDR YLKAPSTHFE EMDIQQKIIQ EMTRMKDERN
101: SLRMIMARYM AEDLASFSVQ DLSNLEQQIE FSLYKVHLRK QELLDQQLLE IRQREMHMPA EQGGYLCLM

Best Arabidopsis Sequence Match ( AT5G23260.2 )
(BLAST)

001: MGRGKIEIKK IENQTARQVT FSKRRTGLIK KTRELSILCD AHIGLIVFSA TGKLSEFCSE QNRMPQLIDR YLHTNGLRLP DHHDDQEQLH HEMELLRRET
101: CNLELRLRPF HGHDLASIPP NELDGLERQL EHSVLKVRER KNELMQQQLE NLSRKRRMLE EDNNNMYRWL HEHRAAMEFQ QAGIDTKPGE YQQFIEQLQC
201: YKPGEYQQFL EQQQQQPNSV LQLATLPSEI DPTYNLQLAQ PNLQNDPTAQ ND

Arabidopsis Description

TT16K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT5G23260]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.