Factsheet for Bra026507.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16841	Canola	nucleus	100.0	98.43
Bra013028.1-P	Field mustard	nucleus	60.06	78.33
Bra029365.1-P	Field mustard	nucleus	58.47	75.62
AT5G23260.4	Thale cress	nucleus	61.02	71.27
VIT_10s0042g00820.t01	Wine grape	nucleus	38.98	51.69
VIT_01s0011g01560.t01	Wine grape	nucleus	35.78	50.0
Bra002285.1-P	Field mustard	nucleus	21.73	46.58
Solyc11g005120.1.1	Tomato	nucleus	35.14	46.22
KRH40895	Soybean	nucleus	35.14	45.08
GSMUA_Achr3P23580_001	Banana	nucleus	34.5	44.81
VIT_02s0025g02350.t01	Wine grape	nucleus	29.39	44.66
KRG89112	Soybean	nucleus	34.5	44.08
GSMUA_Achr2P02660_001	Banana	nucleus	33.55	43.75
Os04t0614100-00	Rice	nucleus	22.36	39.33
Bra020093.1-P	Field mustard	nucleus	25.24	38.92
TraesCS6A01G158100.1	Wheat	nucleus	30.99	38.49
TraesCS6D01G147400.1	Wheat	nucleus	30.99	38.49
Zm00001d015381_P001	Maize	nucleus	31.95	38.46
Bra006549.1-P	Field mustard	nucleus	25.56	38.46
TraesCS6B01G186700.1	Wheat	nucleus	30.99	38.34
EES06346	Sorghum	nucleus	31.31	37.98
Zm00001d018587_P001	Maize	nucleus	20.45	37.87
HORVU6Hr1G032220.7	Barley	nucleus	31.31	37.69
Os02t0170300-01	Rice	nucleus	30.99	37.31
TraesCS3D01G102700.1	Wheat	nucleus	26.2	35.81
TraesCS3D01G090300.1	Wheat	nucleus	24.6	35.16
TraesCS2B01G440900.1	Wheat	nucleus	28.11	34.78
TraesCS1D01G441200.1	Wheat	nucleus	21.09	34.74
TraesCS7A01G475000.1	Wheat	nucleus	24.92	34.67
TraesCS3A01G090900.1	Wheat	nucleus	24.6	33.92
TraesCS3B01G105700.2	Wheat	nucleus	24.6	33.92
TraesCS3A01G090300.1	Wheat	nucleus	24.28	33.78
HORVU2Hr1G098930.3	Barley	nucleus	29.71	33.7
Os06t0667200-01	Rice	nucleus	23.64	33.48
KXG20558	Sorghum	nucleus	25.56	33.47
OQU82318	Sorghum	nucleus	27.48	33.46
Zm00001d003168_P001	Maize	nucleus	25.24	32.78
Zm00001d018767_P001	Maize	nucleus	26.2	32.16
TraesCS2D01G418800.2	Wheat	nucleus	27.8	32.1
TraesCS2A01G422400.2	Wheat	nucleus	27.8	31.99
Zm00001d041587_P001	Maize	nucleus	13.74	31.85
TraesCS7B01G377700.1	Wheat	nucleus	22.04	30.53
HORVU7Hr1G108280.4	Barley	nucleus, plastid	25.88	30.34
HORVU7Hr1G108410.1	Barley	nucleus	20.45	29.36
Bra014822.1-P	Field mustard	nucleus	20.77	29.02
Bra007067.1-P	Field mustard	nucleus	21.09	28.45
Zm00001d033701_P001	Maize	nucleus	21.73	28.1
Zm00001d020114_P001	Maize	nucleus	19.49	27.11
Zm00001d031591_P001	Maize	nucleus	23.96	25.86
Zm00001d047742_P001	Maize	nucleus	23.32	21.41

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra026507	EnsemblPlants:Bra026507.1	EnsemblPlants:Bra026507.1-P	ncoils:Coil
GO:GO:0000003	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009791	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	GO:GO:0048316
InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4ECJ7	InterPro:MADS_MEF2-like	PFAM:PF00319
PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945
PANTHER:PTHR11945:SF257	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
InterPro:TT16-like	UniParc:UPI0002546DD5	SEG:seg	:	:	:

Description

AT5G23260 (E=1e-088) TT16, ABS, AGL32 | TT16 (TRANSPARENT TESTA16); transcription factor

Coordinates

chrA01:+:8942767..8946769

Molecular Weight (calculated)

36717.6 Da

IEP (calculated)

9.662

GRAVY (calculated)

-1.048

Length

313 amino acids

Sequence
(BLAST)

001: MNSLQGYYGL KPTNRRASKE SRSLVDAVIS GFNQSSKPSK EVRCDKPMRD ANNLKLDFSL RENRNSSSRR KRKEMGRGKI EIKKIENKTS RQVTFSKRRN
101: GLIKKTRELS VLCDAHIGLI VFSTTGKLTQ YCSEHSNMPQ LIDRYLTKEG LQLPDLNDDR DDLRHEIEIL RRETCKLELR LRPYHGHDLA SIPPHELEGL
201: EQQLEHSVRK VRERKQQLGN LSRKKRMLED DNNNMYRWLH DEHRTGVEFQ QAGIETKPME YQQFLEQVQY YNDHHQQQSS VLQLPTLPSE IDLSYHLQLA
301: QPNLQNDPTT KVD

Best Arabidopsis Sequence Match ( AT5G23260.1 )
(BLAST)

001: MNIEEEGATH KRKKREMGRG KIEIKKIENQ TARQVTFSKR RTGLIKKTRE LSILCDAHIG LIVFSATGKL SEFCSEQNRM PQLIDRYLHT NGLRLPDHHD
101: DQEQLHHEME LLRRETCNLE LRLRPFHGHD LASIPPNELD GLERQLEHSV LKVRERKQQL ENLSRKRRML EEDNNNMYRW LHEHRAAMEF QQAGIDTKPG
201: EYQQFIEQLQ CYKPGEYQQF LEQQQQQPNS VLQLATLPSE IDPTYNLQLA QPNLQNDPTA QND

Arabidopsis Description

TT16K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT5G23260]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.