Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d018767_P001 | Maize | nucleus | 98.76 | 93.33 |
| Zm00001d018587_P001 | Maize | nucleus | 59.75 | 85.21 |
| OQU82318 | Sorghum | nucleus | 90.46 | 84.82 |
| Zm00001d041587_P001 | Maize | nucleus | 44.4 | 79.26 |
| Os04t0614100-00 | Rice | nucleus | 51.45 | 69.66 |
| Zm00001d020114_P001 | Maize | nucleus | 60.17 | 64.44 |
| TraesCS2B01G440900.1 | Wheat | nucleus | 67.22 | 64.03 |
| TraesCS2D01G418800.2 | Wheat | nucleus | 66.81 | 59.41 |
| TraesCS2A01G422400.2 | Wheat | nucleus | 66.81 | 59.19 |
| HORVU2Hr1G098930.3 | Barley | nucleus | 65.98 | 57.61 |
| Zm00001d033701_P001 | Maize | nucleus | 56.85 | 56.61 |
| Zm00001d031591_P001 | Maize | nucleus | 61.83 | 51.38 |
| Zm00001d047742_P001 | Maize | nucleus | 63.9 | 45.16 |
| GSMUA_Achr3P23580_001 | Banana | nucleus | 43.57 | 43.57 |
| GSMUA_Achr2P02660_001 | Banana | nucleus | 43.15 | 43.33 |
| Zm00001d015381_P001 | Maize | nucleus | 42.74 | 39.62 |
| VIT_10s0042g00820.t01 | Wine grape | nucleus | 38.59 | 39.41 |
| VIT_01s0011g01560.t01 | Wine grape | nucleus | 35.68 | 38.39 |
| VIT_02s0025g02350.t01 | Wine grape | nucleus | 30.71 | 35.92 |
| CDY02217 | Canola | nucleus | 33.61 | 33.75 |
| Bra013028.1-P | Field mustard | nucleus | 33.61 | 33.75 |
| CDY45758 | Canola | nucleus | 33.61 | 33.47 |
| Zm00001d010232_P001 | Maize | nucleus | 29.05 | 33.02 |
| CDX87180 | Canola | nucleus | 33.2 | 32.65 |
| CDY40800 | Canola | nucleus | 32.37 | 32.23 |
| CDY69354 | Canola | nucleus | 31.95 | 31.82 |
| Bra029365.1-P | Field mustard | nucleus | 31.95 | 31.82 |
| Zm00001d036425_P002 | Maize | nucleus | 29.88 | 31.72 |
| KRH40895 | Soybean | nucleus | 31.95 | 31.56 |
| AT5G23260.4 | Thale cress | nucleus | 34.44 | 30.97 |
| Solyc11g005120.1.1 | Tomato | nucleus | 30.29 | 30.67 |
| KRG89112 | Soybean | nucleus | 31.12 | 30.61 |
| Zm00001d042618_P001 | Maize | nucleus | 27.8 | 29.78 |
| Zm00001d011748_P001 | Maize | nucleus | 23.65 | 28.93 |
| Zm00001d010233_P004 | Maize | nucleus | 28.22 | 26.56 |
| Bra026507.1-P | Field mustard | nucleus | 32.78 | 25.24 |
| CDY16841 | Canola | nucleus | 32.78 | 24.84 |
| Zm00001d043589_P002 | Maize | plastid | 24.07 | 21.09 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | UniProt:A0A1D6E786 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 |
| InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | ProteinID:ONM16303.1 | PFAM:PF00319 |
| PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF210 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
| UniParc:UPI000844DF10 | EnsemblPlantsGene:Zm00001d003168 | EnsemblPlants:Zm00001d003168_P001 | EnsemblPlants:Zm00001d003168_T001 | SEG:seg | : |
Description
MADS-transcription factor 27Protein TRANSPARENT TESTA 16
Coordinates
chr2:-:34340843..34342956
Molecular Weight (calculated)
27586.3 Da
IEP (calculated)
9.576
GRAVY (calculated)
-0.532
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKVELKK IENPTNRQVT FSKRRMGLFK KANELAILCD AQIGVIIFSG SGRMYEYSSP PWRIASVFDR YLKAPSTRFE EMDIQQKIVQ EMTRMKDERN
101: RLRMIMAQYM AEDLASFSAQ DLSNLEQQIE FSLYKVRLRK EMHMPAEQSG YLCLMNPAAA IASGQHQQAG EMVGINPRPF PWWDVGASGS GSQSQQLLLH
201: GRDAAESSMT ALGLSPQMHG YRLQPRQPNL QQDADIHRWL W
101: RLRMIMAQYM AEDLASFSAQ DLSNLEQQIE FSLYKVRLRK EMHMPAEQSG YLCLMNPAAA IASGQHQQAG EMVGINPRPF PWWDVGASGS GSQSQQLLLH
201: GRDAAESSMT ALGLSPQMHG YRLQPRQPNL QQDADIHRWL W
001: MGRGKIEIKK IENQTARQVT FSKRRTGLIK KTRELSILCD AHIGLIVFSA TGKLSEFCSE QNRMPQLIDR YLHTNGLRLP DHHDDQEQLH HEMELLRRET
101: CNLELRLRPF HGHDLASIPP NELDGLERQL EHSVLKVRER KRRMLEEDNN NMYRWLHEHR AAMEFQQAGI DTKPGEYQQF IEQLQCYKPG EYQQFLEQQQ
201: QQPNSVLQLA TLPSEIDPTY NLQLAQPNLQ NDPTAQND
101: CNLELRLRPF HGHDLASIPP NELDGLERQL EHSVLKVRER KRRMLEEDNN NMYRWLHEHR AAMEFQQAGI DTKPGEYQQF IEQLQCYKPG EYQQFLEQQQ
201: QQPNSVLQLA TLPSEIDPTY NLQLAQPNLQ NDPTAQND
Arabidopsis Description
TT16K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT5G23260]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.