Factsheet for Zm00001d010233_P004

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002
Zm00001d006094_P001
Zm00001d013702_P001
Zm00001d021057_P001
Zm00001d031620_P001
Zm00001d033247_P001
Zm00001d033248_P002
Zm00001d033252_P001
Zm00001d036425_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20240.1	Zm00001d002027_P002	AT1G22920.1	21798944
AT5G20240.1	Zm00001d006094_P001	AT3G02310.1	15604664
AT5G20240.1	Zm00001d021057_P001	AT3G02310.1	15604664
AT5G20240.1	Zm00001d031620_P001	AT3G02310.1	15604664
AT5G20240.1	Zm00001d036425_P002	AT3G54340.1	15604664
AT5G20240.1	Zm00001d013702_P001	AT5G58230.1	23778966
AT5G20240.1	Zm00001d033247_P001	AT5G58230.1	23778966
AT5G20240.1	Zm00001d033248_P002	AT5G58230.1	23778966
AT5G20240.1	Zm00001d033252_P001	AT5G58230.1	23778966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010232_P001	Maize	nucleus	80.86	97.64
EES18254	Sorghum	nucleus	75.78	91.51
Os05t0423400-01	Rice	nucleus	67.19	80.0
TraesCS1A01G264300.1	Wheat	nucleus	64.06	78.85
TraesCS1B01G275000.1	Wheat	nucleus	63.67	78.37
HORVU1Hr1G063620.1	Barley	nucleus	63.67	73.09
Zm00001d042618_P001	Maize	nucleus	62.11	70.67
TraesCS1D01G264500.1	Wheat	nucleus	53.91	63.3
GSMUA_Achr6P18670_001	Banana	nucleus	51.56	62.56
GSMUA_Achr5P01230_001	Banana	nucleus	50.78	61.61
KRH16433	Soybean	nucleus	46.88	57.69
Bra002285.1-P	Field mustard	nucleus	32.81	57.53
VIT_18s0001g01760.t01	Wine grape	nucleus	47.27	57.08
KRH18034	Soybean	nucleus	46.09	56.73
KRH53304	Soybean	nucleus	39.45	55.8
KRH64611	Soybean	nucleus	39.45	55.8
Solyc06g059970.2.1	Tomato	nucleus	45.31	54.21
CDY35823	Canola	nucleus	31.64	52.6
CDX88846	Canola	nucleus	41.41	52.22
CDY60377	Canola	nucleus	41.41	52.22
CDX92479	Canola	nucleus	30.86	51.3
AT5G20240.1	Thale cress	nucleus	41.41	50.96
CDY45099	Canola	nucleus	40.23	50.74
Bra006549.1-P	Field mustard	nucleus	41.02	50.48
Solyc08g067230.2.1	Tomato	nucleus	41.41	50.48
Bra020093.1-P	Field mustard	nucleus	39.84	50.25
PGSC0003DMT400019070	Potato	nucleus	40.23	49.05
PGSC0003DMT400019069	Potato	cytosol	8.2	35.0
Zm00001d036425_P002	Maize	nucleus	29.69	33.48
Zm00001d015381_P001	Maize	nucleus	33.98	33.46
Zm00001d018587_P001	Maize	nucleus	20.31	30.77
Zm00001d011748_P001	Maize	nucleus	22.27	28.93
Zm00001d041587_P001	Maize	nucleus	15.23	28.89
Zm00001d003168_P001	Maize	nucleus	26.56	28.22
Zm00001d018767_P001	Maize	nucleus	26.95	27.06
Zm00001d020114_P001	Maize	nucleus	20.31	23.11
Zm00001d043589_P002	Maize	plastid	22.27	20.73
Zm00001d033701_P001	Maize	nucleus	19.53	20.66
Zm00001d031591_P001	Maize	nucleus	21.48	18.97
Zm00001d047742_P001	Maize	nucleus	22.66	17.01

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A1D6FPY5	ProteinID:AQK93688.1	ncoils:Coil	GO:GO:0000977
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319
PFAM:PF01486	PRINTS:PR00404	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF211
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000843233F
EnsemblPlantsGene:Zm00001d010233	EnsemblPlants:Zm00001d010233_P004	EnsemblPlants:Zm00001d010233_T004	:	:	:

Description

Zea mays MADS18 Zea mays MADS18

Coordinates

chr8:+:105235190..105237892

Molecular Weight (calculated)

29940.4 Da

IEP (calculated)

9.813

GRAVY (calculated)

-0.565

Length

256 amino acids

Sequence
(BLAST)

001: MGRGKIKIKR IENSTNRQVT FSKRRAGLVK KAREIGVLCD TEVGVVIFSS GGKLYDYCSP RTSSVHCPLI LFILLLVYYR PSSFLLCCVQ AKLIEKTQIW
101: FVGRLSRILE KYQTNSGKIL WGEKHKNLSA EIDRVKKEND NMQIQLRPVH LKGEDLNSLQ HRELIAIEEG LQNGQTNMRE KQAMDYWRMH KTNGKMLEDE
201: HKILTFRMHQ QAVDLSGRMR ELEIGYHQVQ HDRDFISQMP FTFRVQPNHP NLQEDE

Best Arabidopsis Sequence Match ( AT5G20240.1 )
(BLAST)

001: MGRGKIEIKR IENANNRVVT FSKRRNGLVK KAKEITVLCD AKVALIIFAS NGKMIDYCCP SMDLGAMLDQ YQKLSGKKLW DAKHENLSNE IDRIKKENDS
101: LQLELRHLKG EDIQSLNLKN LMAVEHAIEH GLDKVRDHQM EILISKRRNE KMMAEEQRQL TFQLQQQEMA IASNARGMMM RDHDGQFGYR VQPIQPNLQE
201: KIMSLVID

Arabidopsis Description

PIFloral homeotic protein PISTILLATA [Source:UniProtKB/Swiss-Prot;Acc:P48007]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.