Factsheet for TraesCS1D01G264500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G504600.1
TraesCS2D01G505300.1
TraesCS5A01G286800.1
TraesCS5B01G286100.2
TraesCS5B01G378700.1
TraesCS5D01G294500.1
TraesCS5D01G385600.1
TraesCS5D01G385800.1
TraesCS6A01G131100.1
TraesCS6B01G159400.1
TraesCS6D01G120900.1
TraesCS7A01G260600.1
TraesCS7A01G383800.1
TraesCS7B01G158600.1
TraesCS7B01G286600.2
TraesCS7D01G261600.1
TraesCS7D01G380300.1
TraesCSU01G072700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20240.1	TraesCS2A01G504600.1	AT1G22920.1	21798944
AT5G20240.1	TraesCS2D01G505300.1	AT1G22920.1	21798944
AT5G20240.1	TraesCS5A01G286800.1	AT3G02310.1	15604664
AT5G20240.1	TraesCS5B01G286100.2	AT3G02310.1	15604664
AT5G20240.1	TraesCS5D01G294500.1	AT3G02310.1	15604664
AT5G20240.1	TraesCS7A01G260600.1	AT3G02310.1	15604664
AT5G20240.1	TraesCS7B01G158600.1	AT3G02310.1	15604664
AT5G20240.1	TraesCS7D01G261600.1	AT3G02310.1	15604664
AT5G20240.1	TraesCS6A01G131100.1	AT3G54340.1	15604664
AT5G20240.1	TraesCS6B01G159400.1	AT3G54340.1	15604664
AT5G20240.1	TraesCS6D01G120900.1	AT3G54340.1	15604664
AT5G20240.1	TraesCS7A01G383800.1	AT3G54340.1	15604664
AT5G20240.1	TraesCS7B01G286600.2	AT3G54340.1	15604664
AT5G20240.1	TraesCS7D01G380300.1	AT3G54340.1	15604664
AT5G20240.1	TraesCS5B01G378700.1	AT5G58230.1	23778966
AT5G20240.1	TraesCS5D01G385600.1	AT5G58230.1	23778966
AT5G20240.1	TraesCS5D01G385800.1	AT5G58230.1	23778966
AT5G20240.1	TraesCSU01G072700.1	AT5G58230.1	23778966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G264300.1	Wheat	nucleus	78.44	82.21
TraesCS1B01G275000.1	Wheat	nucleus	77.98	81.73
HORVU1Hr1G063620.1	Barley	nucleus	77.06	75.34
Os05t0423400-01	Rice	nucleus	70.64	71.63
Zm00001d010232_P001	Maize	nucleus	64.68	66.51
EES18254	Sorghum	nucleus	63.3	65.09
TraesCS3D01G401700.1	Wheat	nucleus	61.01	63.64
Bra002285.1-P	Field mustard	nucleus	37.16	55.48
GSMUA_Achr5P01230_001	Banana	nucleus	53.67	55.45
GSMUA_Achr6P18670_001	Banana	nucleus	53.67	55.45
KRH53304	Soybean	nucleus	44.95	54.14
Zm00001d010233_P004	Maize	nucleus	63.3	53.91
KRH64611	Soybean	nucleus	44.5	53.59
CDY35823	Canola	nucleus	37.16	52.6
CDX92479	Canola	nucleus	36.24	51.3
KRH16433	Soybean	nucleus	48.62	50.96
KRH18034	Soybean	nucleus	48.17	50.48
VIT_18s0001g01760.t01	Wine grape	nucleus	48.62	50.0
CDY60377	Canola	nucleus	43.58	46.8
CDX88846	Canola	nucleus	43.58	46.8
AT5G20240.1	Thale cress	nucleus	44.04	46.15
CDY45099	Canola	nucleus	42.66	45.81
Bra020093.1-P	Field mustard	nucleus	42.2	45.32
Bra006549.1-P	Field mustard	nucleus	43.12	45.19
Solyc06g059970.2.1	Tomato	nucleus	44.04	44.86
PGSC0003DMT400019070	Potato	nucleus	42.66	44.29
Solyc08g067230.2.1	Tomato	nucleus	42.2	43.81
TraesCS1D01G441200.1	Wheat	nucleus	27.06	31.05
TraesCS7D01G380300.1	Wheat	nucleus	31.65	30.4
TraesCS3D01G284200.1	Wheat	nucleus	27.06	30.1
TraesCS3D01G102700.1	Wheat	nucleus	29.36	27.95
TraesCS6D01G147400.1	Wheat	nucleus	32.11	27.78
TraesCS6D01G120900.1	Wheat	nucleus	29.36	26.78
TraesCS3D01G090300.1	Wheat	nucleus	23.85	23.74
TraesCS2D01G418800.2	Wheat	nucleus	26.61	21.4
PGSC0003DMT400019069	Potato	cytosol	3.67	13.33

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000003	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0010093	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487
InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF211	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	EnsemblPlantsGene:TraesCS1D01G264500	EnsemblPlants:TraesCS1D01G264500.1	TIGR:cd00265	:

Description

No Description!

Coordinates

chr1D:+:360386910..360388790

Molecular Weight (calculated)

25233.7 Da

IEP (calculated)

10.339

GRAVY (calculated)

-0.678

Length

218 amino acids

Sequence
(BLAST)

001: MGRGKIEIKR IENSSNRQVT FAKRRAGLVK KAREIGVLCD AEVGVVIFSS AGKLYDFWTP KTTLPRILEK YQTNSGKILW DEKHKSISAE IDRVKKENDN
101: MQIELRHMKG EDVNSLQPKE LIAIEEALTN GQTNLRDKMM DHWKMHRRNE KMLEEEHKLL ALRMTCISFC QLVKWSIIRA CTMVAYGYRW LRTKSNLRPP
201: AGRPEQRHEG DGARVPSG

Best Arabidopsis Sequence Match ( AT5G20240.1 )
(BLAST)

001: MGRGKIEIKR IENANNRVVT FSKRRNGLVK KAKEITVLCD AKVALIIFAS NGKMIDYCCP SMDLGAMLDQ YQKLSGKKLW DAKHENLSNE IDRIKKENDS
101: LQLELRHLKG EDIQSLNLKN LMAVEHAIEH GLDKVRDHQM EILISKRRNE KMMAEEQRQL TFQLQQQEMA IASNARGMMM RDHDGQFGYR VQPIQPNLQE
201: KIMSLVID

Arabidopsis Description

PIFloral homeotic protein PISTILLATA [Source:UniProtKB/Swiss-Prot;Acc:P48007]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.