CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93698
KRG99108
KRH01380
KRH07712
KRH18339
KRH25650
KRH42369
KRH45097
KRH45889
KRH51760
KRH52586
KRH58491
KRH61083
KRH61926
KRH66520

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20240.1	KRH52586	AT1G22920.1	21798944
AT5G20240.1	KRH61926	AT1G22920.1	21798944
AT5G20240.1	KRG99108	AT1G69690.1	21798944
AT5G20240.1	KRH45889	AT1G69690.1	21798944
AT5G20240.1	KRG93698	AT3G02310.1	15604664
AT5G20240.1	KRH01380	AT3G02310.1	15604664
AT5G20240.1	KRH18339	AT3G02310.1	15604664
AT5G20240.1	KRH45097	AT3G02310.1	15604664
AT5G20240.1	KRH07712	AT3G54340.1	15604664
AT5G20240.1	KRH25650	AT3G54340.1	15604664
AT5G20240.1	KRH51760	AT3G54340.1	15604664
AT5G20240.1	KRH61083	AT3G54340.1	15604664
AT5G20240.1	KRH66520	AT3G54340.1	15604664
AT5G20240.1	KRH42369	AT5G58230.1	23778966
AT5G20240.1	KRH58491	AT5G58230.1	23778966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64611	Soybean	nucleus	96.13	96.13
KRH16433	Soybean	nucleus	80.66	70.19
KRH18034	Soybean	nucleus	79.01	68.75
Bra002285.1-P	Field mustard	nucleus	52.49	65.07
CDY35823	Canola	nucleus	52.49	61.69
VIT_18s0001g01760.t01	Wine grape	nucleus	71.27	60.85
CDX92479	Canola	nucleus	51.38	60.39
Solyc08g067230.2.1	Tomato	nucleus	65.75	56.67
PGSC0003DMT400019070	Potato	nucleus	64.64	55.71
GSMUA_Achr5P01230_001	Banana	nucleus	63.54	54.5
CDY60377	Canola	nucleus	60.77	54.19
CDX88846	Canola	nucleus	60.77	54.19
CDY45099	Canola	nucleus	60.22	53.69
AT5G20240.1	Thale cress	nucleus	61.33	53.37
Bra020093.1-P	Field mustard	nucleus	59.67	53.2
Bra006549.1-P	Field mustard	nucleus	60.22	52.4
GSMUA_Achr6P18670_001	Banana	nucleus	60.77	52.13
EES01864	Sorghum	nucleus	59.12	51.2
TraesCS3D01G401700.1	Wheat	nucleus	59.12	51.2
TraesCS3A01G406500.2	Wheat	nucleus	59.12	51.2
Os01t0883100-01	Rice	nucleus	58.56	50.72
Os05t0423400-01	Rice	nucleus	59.67	50.23
TraesCS3B01G440200.3	Wheat	nucleus	59.12	50.0
EES18254	Sorghum	nucleus	58.56	50.0
Zm00001d010232_P001	Maize	nucleus	56.91	48.58
TraesCS1B01G275000.1	Wheat	nucleus	55.25	48.08
TraesCS1A01G264300.1	Wheat	nucleus	55.25	48.08
Zm00001d042618_P001	Maize	nucleus	58.01	46.67
KRH61083	Soybean	nucleus	35.36	46.04
TraesCS1D01G264500.1	Wheat	nucleus	54.14	44.95
HORVU1Hr1G063620.1	Barley	nucleus	54.7	44.39
Zm00001d010233_P004	Maize	nucleus	55.8	39.45
HORVU3Hr1G091000.8	Barley	nucleus, plastid	59.12	39.19
KRH66520	Soybean	nucleus	25.97	35.61
KRH25650	Soybean	nucleus	25.97	35.61
KRH07712	Soybean	nucleus	25.97	35.61
KRH28746	Soybean	nucleus	42.54	32.91
KRH76708	Soybean	nucleus	41.99	31.28
KRH51760	Soybean	nucleus	38.12	30.4
KRH40895	Soybean	nucleus	40.88	30.33
KRG89112	Soybean	nucleus	39.78	29.39
PGSC0003DMT400019069	Potato	cytosol	4.97	15.0

Protein Annotations

EntrezGene:100306010	MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:ACUP02003458	EMBL:BT089901	UniProt:C6SXK6
ncoils:Coil	EnsemblPlantsGene:GLYMA_06G117600	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487
InterPro:IPR036879	EnsemblPlants:KRH53304	ProteinID:KRH53304	ProteinID:KRH53304.1	InterPro:MADS_MEF2-like	PFAM:PF00319
PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945
PANTHER:PTHR11945:SF97	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI0001B15372	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:9564732..9567790

Molecular Weight (calculated)

20971.4 Da

IEP (calculated)

9.312

GRAVY (calculated)

-0.655

Length

181 amino acids

Sequence
(BLAST)

001: MGRGKIEIKR IENSSNRQVT YSKRKNGILK KAKEISVLCD AQVSLIIFGV SGKMHEYISP YTTLIDVLDR YQRASGKTLW DAKHENLSNE IDRLKKENDS
101: MQIELRHLKG EDITSLNYKE LMALEDALEN GLSGVREKKM EVHRMFKRNG KILEEQNKEL SFLLQQHLAV EGIGNMHEQW I

Best Arabidopsis Sequence Match ( AT5G20240.1 )
(BLAST)

001: MGRGKIEIKR IENANNRVVT FSKRRNGLVK KAKEITVLCD AKVALIIFAS NGKMIDYCCP SMDLGAMLDQ YQKLSGKKLW DAKHENLSNE IDRIKKENDS
101: LQLELRHLKG EDIQSLNLKN LMAVEHAIEH GLDKVRDHQM EILISKRRNE KMMAEEQRQL TFQLQQQEMA IASNARGMMM RDHDGQFGYR VQPIQPNLQE
201: KIMSLVID

Arabidopsis Description

PIFloral homeotic protein PISTILLATA [Source:UniProtKB/Swiss-Prot;Acc:P48007]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.