Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G20240.1 | KXG27287 | AT1G22920.1 | 21798944 |
| AT5G20240.1 | EER97012 | AT3G02310.1 | 15604664 |
| AT5G20240.1 | EES15309 | AT3G02310.1 | 15604664 |
| AT5G20240.1 | EER90370 | AT3G54340.1 | 15604664 |
| AT5G20240.1 | OQU91278 | AT5G58230.1 | 23778966 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0883100-01 | Rice | nucleus | 91.87 | 91.87 |
| Zm00001d042618_P001 | Maize | nucleus | 97.13 | 90.22 |
| TraesCS3A01G406500.2 | Wheat | nucleus | 86.6 | 86.6 |
| TraesCS3D01G401700.1 | Wheat | nucleus | 86.12 | 86.12 |
| TraesCS3B01G440200.3 | Wheat | nucleus | 87.08 | 85.05 |
| EES18254 | Sorghum | nucleus | 77.03 | 75.94 |
| HORVU3Hr1G091000.8 | Barley | nucleus, plastid | 86.6 | 66.3 |
| GSMUA_Achr6P18670_001 | Banana | nucleus | 66.51 | 65.88 |
| GSMUA_Achr5P01230_001 | Banana | nucleus | 66.51 | 65.88 |
| KRH64611 | Soybean | nucleus | 52.15 | 60.22 |
| Bra002285.1-P | Field mustard | nucleus | 41.63 | 59.59 |
| KRH53304 | Soybean | nucleus | 51.2 | 59.12 |
| VIT_18s0001g01760.t01 | Wine grape | nucleus | 58.37 | 57.55 |
| KRH16433 | Soybean | nucleus | 56.94 | 57.21 |
| KRH18034 | Soybean | nucleus | 56.46 | 56.73 |
| Solyc06g059970.2.1 | Tomato | nucleus | 56.46 | 55.14 |
| CDY35823 | Canola | nucleus | 40.19 | 54.55 |
| CDX88846 | Canola | nucleus | 52.63 | 54.19 |
| CDY45099 | Canola | nucleus | 52.63 | 54.19 |
| CDY60377 | Canola | nucleus | 52.63 | 54.19 |
| Bra020093.1-P | Field mustard | nucleus | 52.15 | 53.69 |
| AT5G20240.1 | Thale cress | nucleus | 53.11 | 53.37 |
| CDX92479 | Canola | nucleus | 39.23 | 53.25 |
| Solyc08g067230.2.1 | Tomato | nucleus | 52.63 | 52.38 |
| Bra006549.1-P | Field mustard | nucleus | 51.2 | 51.44 |
| PGSC0003DMT400019070 | Potato | nucleus | 51.2 | 50.95 |
| PGSC0003DMT400019069 | Potato | cytosol | 10.53 | 36.67 |
| EER90370 | Sorghum | nucleus | 39.23 | 36.28 |
| EES06346 | Sorghum | nucleus | 42.58 | 34.5 |
| KXG33296 | Sorghum | nucleus | 27.75 | 29.44 |
| KXG20558 | Sorghum | nucleus | 31.58 | 27.62 |
| OQU82318 | Sorghum | nucleus | 33.49 | 27.24 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | UniProt:C5XEK8 | ncoils:Coil | EnsemblPlants:EES01864 | ProteinID:EES01864 |
| ProteinID:EES01864.2 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015693 | GO:GO:0016020 | GO:GO:0045944 | GO:GO:0046983 |
| InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 |
| PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF347 |
| SMART:SM00432 | EnsemblPlantsGene:SORBI_3003G379000 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
| UniParc:UPI0002663060 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:-:69264822..69268040
Molecular Weight (calculated)
24120.0 Da
IEP (calculated)
8.233
GRAVY (calculated)
-0.761
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKIEIKR IENSTNRQVT FSKRRNGILK KAREISVLCD AEVGVVIFSS AGKLYDYCSP KTSLSKILEK YQTNSGKILW DEKHKSLSAE IDRIKKENDT
101: MQIELRHLKG EDLNSLQPKD LIMIEEALDN GLTNQNEKLM EHWERRVANN KMMEDENKLL AFKLHQQDIA LSGSMRELEL GYHPDRDLAA QMPITFRVQP
201: SHPNLQDNN
101: MQIELRHLKG EDLNSLQPKD LIMIEEALDN GLTNQNEKLM EHWERRVANN KMMEDENKLL AFKLHQQDIA LSGSMRELEL GYHPDRDLAA QMPITFRVQP
201: SHPNLQDNN
001: MGRGKIEIKR IENANNRVVT FSKRRNGLVK KAKEITVLCD AKVALIIFAS NGKMIDYCCP SMDLGAMLDQ YQKLSGKKLW DAKHENLSNE IDRIKKENDS
101: LQLELRHLKG EDIQSLNLKN LMAVEHAIEH GLDKVRDHQM EILISKRRNE KMMAEEQRQL TFQLQQQEMA IASNARGMMM RDHDGQFGYR VQPIQPNLQE
201: KIMSLVID
101: LQLELRHLKG EDIQSLNLKN LMAVEHAIEH GLDKVRDHQM EILISKRRNE KMMAEEQRQL TFQLQQQEMA IASNARGMMM RDHDGQFGYR VQPIQPNLQE
201: KIMSLVID
Arabidopsis Description
PIFloral homeotic protein PISTILLATA [Source:UniProtKB/Swiss-Prot;Acc:P48007]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.