Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH18034 | Soybean | nucleus | 74.53 | 75.96 |
| KRH16433 | Soybean | nucleus | 73.58 | 75.0 |
| KRH64611 | Soybean | nucleus | 62.74 | 73.48 |
| KRH53304 | Soybean | nucleus | 60.85 | 71.27 |
| Bra002285.1-P | Field mustard | nucleus | 48.58 | 70.55 |
| GSMUA_Achr5P01230_001 | Banana | nucleus | 69.34 | 69.67 |
| GSMUA_Achr6P18670_001 | Banana | nucleus | 67.92 | 68.25 |
| PGSC0003DMT400019070 | Potato | nucleus | 65.09 | 65.71 |
| CDY35823 | Canola | nucleus | 47.17 | 64.94 |
| Solyc08g067230.2.1 | Tomato | nucleus | 63.68 | 64.29 |
| CDX92479 | Canola | nucleus | 46.23 | 63.64 |
| CDY45099 | Canola | nucleus | 59.43 | 62.07 |
| Bra020093.1-P | Field mustard | nucleus | 58.96 | 61.58 |
| CDY60377 | Canola | nucleus | 58.49 | 61.08 |
| CDX88846 | Canola | nucleus | 58.49 | 61.08 |
| AT5G20240.1 | Thale cress | nucleus | 59.91 | 61.06 |
| Bra006549.1-P | Field mustard | nucleus | 58.96 | 60.1 |
| TraesCS3A01G406500.2 | Wheat | nucleus | 58.49 | 59.33 |
| TraesCS3D01G401700.1 | Wheat | nucleus | 58.49 | 59.33 |
| EES18254 | Sorghum | nucleus | 58.49 | 58.49 |
| EES01864 | Sorghum | nucleus | 57.55 | 58.37 |
| TraesCS1A01G264300.1 | Wheat | nucleus | 57.08 | 58.17 |
| TraesCS1B01G275000.1 | Wheat | nucleus | 57.08 | 58.17 |
| Os05t0423400-01 | Rice | nucleus | 58.96 | 58.14 |
| Zm00001d010232_P001 | Maize | nucleus | 58.02 | 58.02 |
| TraesCS3B01G440200.3 | Wheat | nucleus | 58.49 | 57.94 |
| Os01t0883100-01 | Rice | nucleus | 57.08 | 57.89 |
| HORVU1Hr1G063620.1 | Barley | nucleus | 57.08 | 54.26 |
| Zm00001d042618_P001 | Maize | nucleus | 57.55 | 54.22 |
| TraesCS1D01G264500.1 | Wheat | nucleus | 50.0 | 48.62 |
| Zm00001d010233_P004 | Maize | nucleus | 57.08 | 47.27 |
| HORVU3Hr1G091000.8 | Barley | nucleus, plastid | 58.96 | 45.79 |
| PGSC0003DMT400019069 | Potato | cytosol | 11.79 | 41.67 |
| VIT_18s0001g13460.t01 | Wine grape | nucleus | 42.45 | 39.82 |
| VIT_02s0025g02350.t01 | Wine grape | nucleus | 34.43 | 35.44 |
| VIT_01s0011g01560.t01 | Wine grape | nucleus | 37.26 | 35.27 |
| VIT_10s0042g00820.t01 | Wine grape | nucleus | 38.21 | 34.32 |
| VIT_04s0023g02820.t01 | Wine grape | nucleus | 41.04 | 28.43 |
Protein Annotations
| EntrezGene:100232978 | wikigene:100232978 | MapMan:15.5.14 | Gene3D:3.40.1810.10 | ProteinID:AAY79173 | ProteinID:AAY79173.1 |
| ProteinID:ABK59993 | ProteinID:ABK59993.1 | ProteinID:AFR53062 | ProteinID:AFR53062.1 | ProteinID:AFR53063 | ProteinID:AFR53063.1 |
| ProteinID:AFR53064 | ProteinID:AFR53064.1 | ProteinID:CCB45452 | ProteinID:CCB45452.1 | ncoils:Coil | EMBL:DQ059750 |
| EMBL:DQ988043 | UniProt:F6H0I0 | EMBL:FN595227 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | EMBL:JQ993315 | EMBL:JQ993316 | EMBL:JQ993317 | EntrezGene:MADS9 |
| wikigene:MADS9 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 |
| PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF354 | SMART:SM00432 | SUPFAM:SSF55455 |
| TIGR:TC53856 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0001985428 | ArrayExpress:VIT_18s0001g01760 |
| EnsemblPlantsGene:VIT_18s0001g01760 | EnsemblPlants:VIT_18s0001g01760.t01 | unigene:Vvi.7981 | : | : | : |
Description
No Description!
Coordinates
chr18:-:2291789..2294046
Molecular Weight (calculated)
24835.0 Da
IEP (calculated)
9.667
GRAVY (calculated)
-0.808
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKIEIKR IENSSNRQVT YSKRRNGIMK KAKEITVLCD AHVSLVIFAS SGKMHEYCSP STTLIDILDR YHKQSGKRLW DAKHENLNNE LDRIKKENDS
101: MQIELRHLKG EDISSLHHKE LMAIEDALEI GLASVRNKQM EFYKMVKKNQ RILEEENKHL NYIVHHQGMP MEAGNVREVE SGYHQRAVRD YNPQMPFAFR
201: VQPIQPNLQE RI
101: MQIELRHLKG EDISSLHHKE LMAIEDALEI GLASVRNKQM EFYKMVKKNQ RILEEENKHL NYIVHHQGMP MEAGNVREVE SGYHQRAVRD YNPQMPFAFR
201: VQPIQPNLQE RI
001: MGRGKIEIKR IENANNRVVT FSKRRNGLVK KAKEITVLCD AKVALIIFAS NGKMIDYCCP SMDLGAMLDQ YQKLSGKKLW DAKHENLSNE IDRIKKENDS
101: LQLELRHLKG EDIQSLNLKN LMAVEHAIEH GLDKVRDHQM EILISKRRNE KMMAEEQRQL TFQLQQQEMA IASNARGMMM RDHDGQFGYR VQPIQPNLQE
201: KIMSLVID
101: LQLELRHLKG EDIQSLNLKN LMAVEHAIEH GLDKVRDHQM EILISKRRNE KMMAEEQRQL TFQLQQQEMA IASNARGMMM RDHDGQFGYR VQPIQPNLQE
201: KIMSLVID
Arabidopsis Description
PIFloral homeotic protein PISTILLATA [Source:UniProtKB/Swiss-Prot;Acc:P48007]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.