Factsheet for Zm00001d010232_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002
Zm00001d006094_P001
Zm00001d013702_P001
Zm00001d021057_P001
Zm00001d031620_P001
Zm00001d033247_P001
Zm00001d033248_P002
Zm00001d033252_P001
Zm00001d036425_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20240.1	Zm00001d002027_P002	AT1G22920.1	21798944
AT5G20240.1	Zm00001d006094_P001	AT3G02310.1	15604664
AT5G20240.1	Zm00001d021057_P001	AT3G02310.1	15604664
AT5G20240.1	Zm00001d031620_P001	AT3G02310.1	15604664
AT5G20240.1	Zm00001d036425_P002	AT3G54340.1	15604664
AT5G20240.1	Zm00001d013702_P001	AT5G58230.1	23778966
AT5G20240.1	Zm00001d033247_P001	AT5G58230.1	23778966
AT5G20240.1	Zm00001d033248_P002	AT5G58230.1	23778966
AT5G20240.1	Zm00001d033252_P001	AT5G58230.1	23778966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18254	Sorghum	nucleus	92.92	92.92
Zm00001d010233_P004	Maize	nucleus	97.64	80.86
TraesCS1A01G264300.1	Wheat	nucleus	79.25	80.77
Os05t0423400-01	Rice	nucleus	81.6	80.47
TraesCS1B01G275000.1	Wheat	nucleus	78.3	79.81
HORVU1Hr1G063620.1	Barley	nucleus	78.77	74.89
Zm00001d042618_P001	Maize	nucleus	76.42	72.0
TraesCS1D01G264500.1	Wheat	nucleus	66.51	64.68
GSMUA_Achr6P18670_001	Banana	nucleus	63.68	63.98
GSMUA_Achr5P01230_001	Banana	nucleus	62.74	63.03
Bra002285.1-P	Field mustard	nucleus	40.57	58.9
KRH16433	Soybean	nucleus	57.55	58.65
VIT_18s0001g01760.t01	Wine grape	nucleus	58.02	58.02
KRH18034	Soybean	nucleus	56.6	57.69
KRH53304	Soybean	nucleus	48.58	56.91
KRH64611	Soybean	nucleus	48.58	56.91
Solyc06g059970.2.1	Tomato	nucleus	55.66	55.14
CDY35823	Canola	nucleus	39.15	53.9
CDX88846	Canola	nucleus	50.94	53.2
CDY60377	Canola	nucleus	50.94	53.2
CDX92479	Canola	nucleus	38.21	52.6
AT5G20240.1	Thale cress	nucleus	50.94	51.92
CDY45099	Canola	nucleus	49.53	51.72
Bra006549.1-P	Field mustard	nucleus	50.47	51.44
Bra020093.1-P	Field mustard	nucleus	49.06	51.23
Solyc08g067230.2.1	Tomato	nucleus	50.47	50.95
PGSC0003DMT400019070	Potato	nucleus	49.06	49.52
Zm00001d036425_P002	Maize	nucleus	36.79	34.36
Zm00001d015381_P001	Maize	nucleus	41.98	34.23
PGSC0003DMT400019069	Potato	cytosol	9.43	33.33
Zm00001d018587_P001	Maize	nucleus	25.47	31.95
Zm00001d041587_P001	Maize	nucleus	18.87	29.63
Zm00001d003168_P001	Maize	nucleus	33.02	29.05
Zm00001d011748_P001	Maize	nucleus	26.89	28.93
Zm00001d018767_P001	Maize	nucleus	33.49	27.84
Zm00001d020114_P001	Maize	nucleus	25.47	24.0
Zm00001d043589_P002	Maize	plastid	27.36	21.09
Zm00001d033701_P001	Maize	nucleus	24.06	21.07
Zm00001d031591_P001	Maize	nucleus	26.89	19.66
Zm00001d047742_P001	Maize	nucleus	28.3	17.6

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:AQK93678.1	ProteinID:AQK93682.1	ncoils:Coil	GO:GO:0000977
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:K7UVK0	EMBL:KJ726930
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	PFscan:PS50066	PFscan:PS51297
PANTHER:PTHR11945	PANTHER:PTHR11945:SF211	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI000221F25A	EnsemblPlantsGene:Zm00001d010232	EnsemblPlants:Zm00001d010232_P001	EnsemblPlants:Zm00001d010232_T001	:

Description

Zea mays MADS29 Zea mays MADS29

Coordinates

chr8:+:105191750..105194741

Molecular Weight (calculated)

24698.6 Da

IEP (calculated)

9.367

GRAVY (calculated)

-0.886

Length

212 amino acids

Sequence
(BLAST)

001: MGRGKIEIKR IENSTNRQVT FSKRRAGLVK KAREIGVLCD AEVGVVIFSS GGKLYDYCSP RTSLSRILEK YQTNSGKILW GEKHKNLSAE IDRVKKENDN
101: MQIQLRHLKG EDLNSLQPRE LIAIEEGLQN GQTNMREKQM DYWRMHKTNG KMLEDEHKIL TFRMHQQAVD LSGGMRELET GYHQVQHDRD FISQMPFTFR
201: VQPNHPNLQE DE

Best Arabidopsis Sequence Match ( AT5G20240.1 )
(BLAST)

001: MGRGKIEIKR IENANNRVVT FSKRRNGLVK KAKEITVLCD AKVALIIFAS NGKMIDYCCP SMDLGAMLDQ YQKLSGKKLW DAKHENLSNE IDRIKKENDS
101: LQLELRHLKG EDIQSLNLKN LMAVEHAIEH GLDKVRDHQM EILISKRRNE KMMAEEQRQL TFQLQQQEMA IASNARGMMM RDHDGQFGYR VQPIQPNLQE
201: KIMSLVID

Arabidopsis Description

PIFloral homeotic protein PISTILLATA [Source:UniProtKB/Swiss-Prot;Acc:P48007]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.