Factsheet for PGSC0003DMT400019070

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400003483
PGSC0003DMT400008728
PGSC0003DMT400009510
PGSC0003DMT400023896
PGSC0003DMT400061016
PGSC0003DMT400069203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20240.1	PGSC0003DMT400023896	AT1G22920.1	21798944
AT5G20240.1	PGSC0003DMT400069203	AT1G22920.1	21798944
AT5G20240.1	PGSC0003DMT400008728	AT1G69690.1	21798944
AT5G20240.1	PGSC0003DMT400003483	AT3G02310.1	15604664
AT5G20240.1	PGSC0003DMT400009510	AT3G54340.1	15604664
AT5G20240.1	PGSC0003DMT400061016	AT5G58230.1	23778966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019069	Potato	cytosol	28.57	100.0
Solyc08g067230.2.1	Tomato	nucleus	97.14	97.14
KRH64611	Soybean	nucleus	56.67	65.75
KRH18034	Soybean	nucleus	64.76	65.38
VIT_18s0001g01760.t01	Wine grape	nucleus	65.71	65.09
KRH53304	Soybean	nucleus	55.71	64.64
KRH16433	Soybean	nucleus	63.81	64.42
Bra002285.1-P	Field mustard	nucleus	44.29	63.7
CDY35823	Canola	nucleus	43.33	59.09
CDX92479	Canola	nucleus	42.86	58.44
GSMUA_Achr6P18670_001	Banana	nucleus	55.71	55.45
AT5G20240.1	Thale cress	nucleus	54.76	55.29
GSMUA_Achr5P01230_001	Banana	nucleus	55.24	54.98
CDY60377	Canola	nucleus	52.38	54.19
CDY45099	Canola	nucleus	52.38	54.19
CDX88846	Canola	nucleus	52.38	54.19
Bra020093.1-P	Field mustard	nucleus	51.9	53.69
Bra006549.1-P	Field mustard	nucleus	52.86	53.37
TraesCS3A01G406500.2	Wheat	nucleus	50.95	51.2
TraesCS3D01G401700.1	Wheat	nucleus	50.95	51.2
EES01864	Sorghum	nucleus	50.95	51.2
TraesCS3B01G440200.3	Wheat	nucleus	50.95	50.0
Os01t0883100-01	Rice	nucleus	49.52	49.76
TraesCS1A01G264300.1	Wheat	nucleus	49.05	49.52
TraesCS1B01G275000.1	Wheat	nucleus	49.05	49.52
Zm00001d010232_P001	Maize	nucleus	49.52	49.06
Os05t0423400-01	Rice	nucleus	50.0	48.84
EES18254	Sorghum	nucleus	49.05	48.58
Zm00001d042618_P001	Maize	nucleus	50.95	47.56
HORVU1Hr1G063620.1	Barley	nucleus	48.57	45.74
TraesCS1D01G264500.1	Wheat	nucleus	44.29	42.66
Zm00001d010233_P004	Maize	nucleus	49.05	40.23
HORVU3Hr1G091000.8	Barley	nucleus, plastid	51.43	39.56
PGSC0003DMT400009112	Potato	nucleus	37.14	34.67
PGSC0003DMT400009510	Potato	nucleus	36.19	33.33

Protein Annotations

EntrezGene:102595949	MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000003	GO:GO:0000977
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009653	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010093	GO:GO:0045944
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M1ABL0	InterPro:MADS_MEF2-like
PFAM:PF00319	PFAM:PF01486	EnsemblPlantsGene:PGSC0003DMG401007392	PGSC:PGSC0003DMG401007392	EnsemblPlants:PGSC0003DMT400019070	PRINTS:PR00404
ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF97	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00029649F1	RefSeq:XP_006361522.1

Description

MADS-box protein GLO1 [Source:PGSC_GENE;Acc:PGSC0003DMG401007392]

Coordinates

chr8:+:40704456..40708461

Molecular Weight (calculated)

24658.6 Da

IEP (calculated)

8.691

GRAVY (calculated)

-0.812

Length

210 amino acids

Sequence
(BLAST)

001: MGRGKIEIKR IENSSNRQVT YSKRRNGILK KAKEISVLCD AHVSVIIFAT SGKMHEFSST PLVDILDQYH KLTGRRLWDA KHENLDNEIN KVKKDNDNMQ
101: IELRHLKGED ISSLNYRELM ILEDALEIGL TGIRDKQNEF VRMVRKKTQN MEQEQDQLNC QLRQLEIASM NRNMGEVGEV FEQTRENHDY GQMPFAFRVQ
201: PMQPNLHQRF

Best Arabidopsis Sequence Match ( AT5G20240.1 )
(BLAST)

001: MGRGKIEIKR IENANNRVVT FSKRRNGLVK KAKEITVLCD AKVALIIFAS NGKMIDYCCP SMDLGAMLDQ YQKLSGKKLW DAKHENLSNE IDRIKKENDS
101: LQLELRHLKG EDIQSLNLKN LMAVEHAIEH GLDKVRDHQM EILISKRRNE KMMAEEQRQL TFQLQQQEMA IASNARGMMM RDHDGQFGYR VQPIQPNLQE
201: KIMSLVID

Arabidopsis Description

PIFloral homeotic protein PISTILLATA [Source:UniProtKB/Swiss-Prot;Acc:P48007]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.