Factsheet for PGSC0003DMT400009510

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400003483
PGSC0003DMT400019069
PGSC0003DMT400019070
PGSC0003DMT400045739

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54340.1	PGSC0003DMT400045739	AT1G30950.1	18287201
AT3G54340.1	PGSC0003DMT400003483	AT3G02310.1	15604664
AT3G54340.1	PGSC0003DMT400019069	AT5G20240.1	15604664
AT3G54340.1	PGSC0003DMT400019070	AT5G20240.1	15604664

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g081000.2.1	Tomato	nucleus	94.74	94.74
KRH61083	Soybean	nucleus	46.05	75.54
VIT_18s0001g13460.t01	Wine grape	nucleus	69.3	69.91
KRH66520	Soybean	nucleus	39.91	68.94
KRH25650	Soybean	nucleus	39.91	68.94
KRH07712	Soybean	nucleus	39.47	68.18
KRH51760	Soybean	nucleus	65.79	66.08
Bra014822.1-P	Field mustard	nucleus	58.33	59.38
CDX76152	Canola	nucleus	57.89	58.93
GSMUA_Achr9P20940_001	Banana	nucleus	26.32	58.82
CDY69833	Canola	nucleus	45.61	58.76
CDY13200	Canola	nucleus	57.46	58.48
PGSC0003DMT400009112	Potato	nucleus	57.46	58.22
Bra007067.1-P	Field mustard	nucleus	58.33	57.33
CDX73487	Canola	nucleus	58.33	57.33
AT3G54340.1	Thale cress	nucleus	57.46	56.47
GSMUA_Achr9P20950_001	Banana	nucleus	52.19	52.89
TraesCS7B01G286600.2	Wheat	nucleus	53.07	52.84
TraesCS7D01G380300.1	Wheat	nucleus	52.19	52.42
Os06t0712700-01	Rice	nucleus	51.32	52.23
EER90370	Sorghum	nucleus	51.75	52.21
TraesCS7A01G383800.1	Wheat	nucleus	53.07	51.05
Zm00001d036425_P002	Maize	nucleus	50.44	50.66
TraesCS6D01G120900.1	Wheat	nucleus	46.93	44.77
TraesCS6B01G159400.1	Wheat	nucleus	45.18	44.59
TraesCS6A01G131100.1	Wheat	nucleus	43.86	41.84
HORVU7Hr1G091210.4	Barley	nucleus, plastid	42.54	40.76
PGSC0003DMT400019070	Potato	nucleus	33.33	36.19
PGSC0003DMT400019069	Potato	cytosol	5.7	21.67

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:CAA47845	ProteinID:CAA47845.1	ProteinID:CAA47846	ProteinID:CAA47846.1
ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	EnsemblPlantsGene:PGSC0003DMG400003709	PGSC:PGSC0003DMG400003709	EnsemblPlants:PGSC0003DMT400009510
PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF219
UniProt:Q41417	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI000009F817	EMBL:X67508	EMBL:X67511	SEG:seg	:	:

Description

Deficiens analogue [Source:PGSC_GENE;Acc:PGSC0003DMG400003709]

Coordinates

chr4:+:70409561..70413264

Molecular Weight (calculated)

26368.6 Da

IEP (calculated)

9.657

GRAVY (calculated)

-0.708

Length

228 amino acids

Sequence
(BLAST)

001: MARGKIQIKK IENQTNRQVT YSKRRNGLFK KANELTVLCD AKVSIVMISS TGKLHEFISP SITTKQLFDL YQKTIGVDIW TSHYEKMQEQ LRKLKDVNRN
101: LRKEIRQRMG ESLNDLNFEQ LEELMENVDN SLKLIRERKY KVIGNQIETY RKKVRNVEEI HRNLLLEFDA RQEDPYGGLV EQEGDYNSVL GFPTGGHHIL
201: ALGLQPNNNH HHHLHSGGGS DITTFALG

Best Arabidopsis Sequence Match ( AT3G54340.1 )
(BLAST)

001: MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD ARVSIIMFSS SNKLHEYISP NTTTKEIVDL YQTISDVDVW ATQYERMQET KRKLLETNRN
101: LRTQIKQRLG ECLDELDIQE LRRLEDEMEN TFKLVRERKF KSLGNQIETT KKKNKSQQDI QKNLIHELEL RAEDPHYGLV DNGGDYDSVL GYQIEGSRAY
201: ALRFHQNHHH YYPNHGLHAP SASDIITFHL LE

Arabidopsis Description

AP3Floral homeotic protein APETALA 3 [Source:UniProtKB/Swiss-Prot;Acc:P35632]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.