CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER97012
EES01864
EES15309
EES18254
OQU76836

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54340.1	OQU76836	AT1G30950.1	18287201
AT3G54340.1	EER97012	AT3G02310.1	15604664
AT3G54340.1	EES15309	AT3G02310.1	15604664
AT3G54340.1	EES01864	AT5G20240.1	15604664
AT3G54340.1	EES18254	AT5G20240.1	15604664

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036425_P002	Maize	nucleus	93.81	93.39
Os06t0712700-01	Rice	nucleus	91.59	92.41
TraesCS7B01G286600.2	Wheat	nucleus	92.92	91.7
TraesCS7D01G380300.1	Wheat	nucleus	92.04	91.63
TraesCS7A01G383800.1	Wheat	nucleus	92.48	88.19
TraesCS6B01G159400.1	Wheat	nucleus	75.22	73.59
TraesCS6D01G120900.1	Wheat	nucleus	77.43	73.22
GSMUA_Achr9P20940_001	Banana	nucleus	32.3	71.57
TraesCS6A01G131100.1	Wheat	nucleus	73.45	69.46
KRH61083	Soybean	nucleus	39.38	64.03
HORVU7Hr1G091210.4	Barley	nucleus, plastid	64.16	60.92
VIT_18s0001g13460.t01	Wine grape	nucleus	55.31	55.31
KRH25650	Soybean	nucleus	32.3	55.3
KRH66520	Soybean	nucleus	32.3	55.3
KRH07712	Soybean	nucleus	31.86	54.55
CDY69833	Canola	nucleus	42.48	54.24
Solyc02g084630.2.1	Tomato	nucleus	53.54	53.78
PGSC0003DMT400009112	Potato	nucleus	53.1	53.33
KRH51760	Soybean	nucleus	52.65	52.42
PGSC0003DMT400009510	Potato	nucleus	52.21	51.75
Solyc04g081000.2.1	Tomato	nucleus	51.77	51.32
CDX76152	Canola	nucleus	48.23	48.66
CDX73487	Canola	nucleus	49.56	48.28
AT3G54340.1	Thale cress	nucleus	49.56	48.28
CDY13200	Canola	nucleus	47.79	48.21
Bra014822.1-P	Field mustard	nucleus	47.79	48.21
Bra007067.1-P	Field mustard	nucleus	49.12	47.84
KRH28746	Soybean	nucleus	47.79	46.15
KRH76708	Soybean	nucleus	49.12	45.68
VIT_04s0023g02820.t01	Wine grape	nucleus	58.41	43.14
EES01864	Sorghum	nucleus	36.28	39.23
EES18254	Sorghum	nucleus	33.63	35.85
KXG33296	Sorghum	nucleus	28.32	32.49
EES06346	Sorghum	nucleus	36.73	32.17
OQU82318	Sorghum	nucleus	33.19	29.18
KXG20558	Sorghum	nucleus	28.76	27.2

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EntrezGene:8064983	UniProt:C5Z1S2	ncoils:Coil	EnsemblPlants:EER90370
ProteinID:EER90370	ProteinID:EER90370.1	GO:GO:0000003	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0010093	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487
InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF251	SMART:SM00432	EnsemblPlantsGene:SORBI_3010G261800	SUPFAM:SSF55455
InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0001A89818	RefSeq:XP_002439003.1	SEG:seg

Description

hypothetical protein

Coordinates

chr10:-:59837462..59842467

Molecular Weight (calculated)

25723.6 Da

IEP (calculated)

9.213

GRAVY (calculated)

-0.691

Length

226 amino acids

Sequence
(BLAST)

001: MGRGKIEIKR IENATNRQVT YSKRRTGIMK KARELTVLCD AQVAIIMFSS TGKYHEFCSP GTDIKTIFDR YQQAIGTSLW NEQYENMQRT LSHLKDINRN
101: LRTEIRQRMG EDLDTLEFDE LRGLEQNVDA ALKEVRHRKY HVIATQTETY KKKVKHSYEA YKNLQQELGM REDPAFGFVD NTGAGGWDGA AAALGGGAPD
201: MYAFRVVPSQ PNLHGMAYGS HDLRLG

Best Arabidopsis Sequence Match ( AT3G54340.1 )
(BLAST)

001: MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD ARVSIIMFSS SNKLHEYISP NTTTKEIVDL YQTISDVDVW ATQYERMQET KRKLLETNRN
101: LRTQIKQRLG ECLDELDIQE LRRLEDEMEN TFKLVRERKF KSLGNQIETT KKKNKSQQDI QKNLIHELEL RAEDPHYGLV DNGGDYDSVL GYQIEGSRAY
201: ALRFHQNHHH YYPNHGLHAP SASDIITFHL LE

Arabidopsis Description

AP3Floral homeotic protein APETALA 3 [Source:UniProtKB/Swiss-Prot;Acc:P35632]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.