Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g081670.1.1 | |
| Solyc02g089200.2.1 | |
| Solyc06g059970.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G54340.1 | Solyc02g081670.1.1 | AT1G30950.1 | 18287201 |
| AT3G54340.1 | Solyc02g089200.2.1 | AT3G02310.1 | 15604664 |
| AT3G54340.1 | Solyc06g059970.2.1 | AT5G20240.1 | 15604664 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400009510 | Potato | nucleus | 94.74 | 94.74 |
| KRH61083 | Soybean | nucleus | 45.61 | 74.82 |
| VIT_18s0001g13460.t01 | Wine grape | nucleus | 68.42 | 69.03 |
| KRH66520 | Soybean | nucleus | 39.47 | 68.18 |
| KRH25650 | Soybean | nucleus | 39.47 | 68.18 |
| KRH07712 | Soybean | nucleus | 39.04 | 67.42 |
| KRH51760 | Soybean | nucleus | 64.91 | 65.2 |
| Bra014822.1-P | Field mustard | nucleus | 59.21 | 60.27 |
| CDY69833 | Canola | nucleus | 46.49 | 59.89 |
| CDX76152 | Canola | nucleus | 58.77 | 59.82 |
| GSMUA_Achr9P20940_001 | Banana | nucleus | 26.75 | 59.8 |
| CDY13200 | Canola | nucleus | 58.33 | 59.38 |
| Bra007067.1-P | Field mustard | nucleus | 59.21 | 58.19 |
| CDX73487 | Canola | nucleus | 59.21 | 58.19 |
| AT3G54340.1 | Thale cress | nucleus | 58.77 | 57.76 |
| Solyc02g084630.2.1 | Tomato | nucleus | 55.26 | 56.0 |
| GSMUA_Achr9P20950_001 | Banana | nucleus | 51.32 | 52.0 |
| TraesCS7B01G286600.2 | Wheat | nucleus | 52.19 | 51.97 |
| EER90370 | Sorghum | nucleus | 51.32 | 51.77 |
| TraesCS7D01G380300.1 | Wheat | nucleus | 51.32 | 51.54 |
| Os06t0712700-01 | Rice | nucleus | 50.44 | 51.34 |
| Zm00001d036425_P002 | Maize | nucleus | 50.0 | 50.22 |
| TraesCS7A01G383800.1 | Wheat | nucleus | 52.19 | 50.21 |
| TraesCS6D01G120900.1 | Wheat | nucleus | 45.61 | 43.51 |
| TraesCS6B01G159400.1 | Wheat | nucleus | 43.86 | 43.29 |
| TraesCS6A01G131100.1 | Wheat | nucleus | 42.54 | 40.59 |
| HORVU7Hr1G091210.4 | Barley | nucleus, plastid | 41.67 | 39.92 |
| Solyc06g059970.2.1 | Tomato | nucleus | 35.53 | 37.85 |
| Solyc08g067230.2.1 | Tomato | nucleus | 34.21 | 37.14 |
| Solyc11g005120.1.1 | Tomato | nucleus | 27.63 | 26.47 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ProteinID:CAJ53871.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 |
| InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 |
| PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF219 |
| UniProt:Q2UVA8 | SMART:SM00432 | SUPFAM:SSF55455 | EnsemblPlantsGene:Solyc04g081000.2 | EnsemblPlants:Solyc04g081000.2.1 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0000675BC1 | : | : | : |
Description
Floral homeotic protein APETALA 3 [Source:Projected from Arabidopsis thaliana (AT3G54340) UniProtKB/Swiss-Prot;Acc:P35632]
Coordinates
chr4:+:65059948..65063518
Molecular Weight (calculated)
26479.8 Da
IEP (calculated)
9.759
GRAVY (calculated)
-0.741
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MARGKIQIKK IENQTNRQVT YSKRRNGLFK KANELTVLCD AKVSIVMISS TGKLHEFISP SITTKQLFDL YQKTIGVDIW TTHYEKMQEQ LRKLKDVNRN
101: LRKEIRQRMG ESLNDLNYEQ LEELMENVDN SLKLIRERKF KVIGNQIETY RKKVRNVEEI NRNLLLEFDA RQEDPYGGLV EHDGDYNSVL GFPTGGPRIL
201: DLRLQPNNNY HNHLHSGGGS DITTFALG
101: LRKEIRQRMG ESLNDLNYEQ LEELMENVDN SLKLIRERKF KVIGNQIETY RKKVRNVEEI NRNLLLEFDA RQEDPYGGLV EHDGDYNSVL GFPTGGPRIL
201: DLRLQPNNNY HNHLHSGGGS DITTFALG
001: MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD ARVSIIMFSS SNKLHEYISP NTTTKEIVDL YQTISDVDVW ATQYERMQET KRKLLETNRN
101: LRTQIKQRLG ECLDELDIQE LRRLEDEMEN TFKLVRERKF KSLGNQIETT KKKNKSQQDI QKNLIHELEL RAEDPHYGLV DNGGDYDSVL GYQIEGSRAY
201: ALRFHQNHHH YYPNHGLHAP SASDIITFHL LE
101: LRTQIKQRLG ECLDELDIQE LRRLEDEMEN TFKLVRERKF KSLGNQIETT KKKNKSQQDI QKNLIHELEL RAEDPHYGLV DNGGDYDSVL GYQIEGSRAY
201: ALRFHQNHHH YYPNHGLHAP SASDIITFHL LE
Arabidopsis Description
AP3Floral homeotic protein APETALA 3 [Source:UniProtKB/Swiss-Prot;Acc:P35632]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.