Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH61083 | Soybean | nucleus | 58.82 | 43.17 |
| GSMUA_Achr9P20950_001 | Banana | nucleus | 86.27 | 39.11 |
| KRH25650 | Soybean | nucleus | 44.12 | 34.09 |
| KRH07712 | Soybean | nucleus | 44.12 | 34.09 |
| KRH66520 | Soybean | nucleus | 44.12 | 34.09 |
| CDY69833 | Canola | nucleus | 58.82 | 33.9 |
| Os06t0712700-01 | Rice | nucleus | 72.55 | 33.04 |
| EER90370 | Sorghum | nucleus | 71.57 | 32.3 |
| Zm00001d036425_P002 | Maize | nucleus | 71.57 | 32.16 |
| TraesCS7D01G380300.1 | Wheat | nucleus | 69.61 | 31.28 |
| TraesCS7B01G286600.2 | Wheat | nucleus | 69.61 | 31.0 |
| VIT_18s0001g13460.t01 | Wine grape | nucleus | 65.69 | 29.65 |
| TraesCS7A01G383800.1 | Wheat | nucleus | 68.63 | 29.54 |
| HORVU7Hr1G091210.4 | Barley | nucleus, plastid | 68.63 | 29.41 |
| PGSC0003DMT400009112 | Potato | nucleus | 61.76 | 28.0 |
| Solyc02g084630.2.1 | Tomato | nucleus | 61.76 | 28.0 |
| KRH51760 | Soybean | nucleus | 61.76 | 27.75 |
| Bra014822.1-P | Field mustard | nucleus | 59.8 | 27.23 |
| CDX76152 | Canola | nucleus | 59.8 | 27.23 |
| CDY13200 | Canola | nucleus | 59.8 | 27.23 |
| GSMUA_Achr5P01230_001 | Banana | nucleus | 55.88 | 27.01 |
| KRH28746 | Soybean | nucleus | 61.76 | 26.92 |
| Solyc04g081000.2.1 | Tomato | nucleus | 59.8 | 26.75 |
| GSMUA_Achr6P18670_001 | Banana | nucleus | 54.9 | 26.54 |
| KRH76708 | Soybean | nucleus | 62.75 | 26.34 |
| PGSC0003DMT400009510 | Potato | nucleus | 58.82 | 26.32 |
| Bra007067.1-P | Field mustard | nucleus | 59.8 | 26.29 |
| CDX73487 | Canola | nucleus | 59.8 | 26.29 |
| TraesCS6D01G120900.1 | Wheat | nucleus | 60.78 | 25.94 |
| AT3G54340.1 | Thale cress | nucleus | 58.82 | 25.86 |
| TraesCS6B01G159400.1 | Wheat | nucleus | 56.86 | 25.11 |
| TraesCS6A01G131100.1 | Wheat | nucleus | 54.9 | 23.43 |
| GSMUA_Achr2P02660_001 | Banana | nucleus | 52.94 | 22.5 |
| GSMUA_Achr3P23580_001 | Banana | nucleus | 51.96 | 21.99 |
| VIT_04s0023g02820.t01 | Wine grape | nucleus | 64.71 | 21.57 |
| GSMUA_Achr9P05780_001 | Banana | nucleus | 42.16 | 20.09 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSMUA_Achr9G20940_001 | EnsemblPlants:GSMUA_Achr9P20940_001 | EnsemblPlants:GSMUA_Achr9T20940_001 |
| InterPro:IPR002100 | InterPro:IPR036879 | UniProt:M0U253 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PRINTS:PR00404 |
| ScanProsite:PS00350 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF251 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000295A7A5 | : | : | : |
Description
MADS-box transcription factor 16 [Source:GMGC_GENE;Acc:GSMUA_Achr9G20940_001]
Coordinates
chr9:+:25424758..25425213
Molecular Weight (calculated)
11730.1 Da
IEP (calculated)
9.553
GRAVY (calculated)
-0.455
Length
102 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKIEIKK IENPTNRQVT YSKRRTGIMK KAKELTVLCD AEVSIIMFSS TGKFSEYCSP STDTKKIFDR YQQVSGTNLW SAQYEARTTF ISEFHVCICF
101: HS
101: HS
001: MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD ARVSIIMFSS SNKLHEYISP NTTTKEIVDL YQTISDVDVW ATQYERMQET KRKLLETNRN
101: LRTQIKQRLG ECLDELDIQE LRRLEDEMEN TFKLVRERKF KSLGNQIETT KKKNKSQQDI QKNLIHELEL RAEDPHYGLV DNGGDYDSVL GYQIEGSRAY
201: ALRFHQNHHH YYPNHGLHAP SASDIITFHL LE
101: LRTQIKQRLG ECLDELDIQE LRRLEDEMEN TFKLVRERKF KSLGNQIETT KKKNKSQQDI QKNLIHELEL RAEDPHYGLV DNGGDYDSVL GYQIEGSRAY
201: ALRFHQNHHH YYPNHGLHAP SASDIITFHL LE
Arabidopsis Description
AP3Floral homeotic protein APETALA 3 [Source:UniProtKB/Swiss-Prot;Acc:P35632]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.