Factsheet for GSMUA_Achr3P23630_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr2P20500_001
GSMUA_Achr5P04140_001
GSMUA_Achr8P11930_001
GSMUA_Achr8P31220_001
GSMUA_Achr9P17620_001
GSMUA_Achr9P19410_001
GSMUA_Achr9P20940_001
GSMUA_Achr9P20950_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30950.1	GSMUA_Achr10P...	AT1G22920.1	12724534
AT1G30950.1	GSMUA_Achr9P20940_001	AT3G54340.1	18287201
AT1G30950.1	GSMUA_Achr9P20950_001	AT3G54340.1	18287201
AT1G30950.1	GSMUA_Achr11P...	AT3G61140.1	12724534
AT1G30950.1	GSMUA_Achr11P...	AT3G61140.1	12724534
AT1G30950.1	GSMUA_Achr8P11930_001	AT3G61140.1	12724534
AT1G30950.1	GSMUA_Achr9P17620_001	AT4G02570.1	12724534
AT1G30950.1	GSMUA_Achr2P20500_001	AT4G14110.1	12724534
AT1G30950.1	GSMUA_Achr8P31220_001	AT5G42970.1	12724534
AT1G30950.1	GSMUA_Achr9P19410_001	AT5G42970.1	12724534
AT1G30950.1	GSMUA_Achr5P04140_001	AT5G56280.1	12724534

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0011g01220.t01	Wine grape	plastid	57.33	50.23
KRH58532	Soybean	plastid	54.45	48.37
KRH42420	Soybean	plastid	54.71	47.5
Solyc02g081670.1.1	Tomato	plastid	55.24	46.37
Os06t0665400-01	Rice	plastid	51.83	46.15
PGSC0003DMT400045739	Potato	plastid	55.24	46.07
OQU76836	Sorghum	plastid	51.57	45.71
Zm00001d046950_P001	Maize	cytosol, mitochondrion, plastid	51.31	45.27
TraesCS7A01G481600.1	Wheat	plastid	52.09	45.23
Zm00001d036653_P001	Maize	plastid	51.57	45.18
HORVU7Hr1G108970.1	Barley	cytosol, plasma membrane, plastid	51.57	44.98
AT1G30950.1	Thale cress	plastid	51.57	44.57
TraesCS7D01G468700.1	Wheat	plastid	51.31	44.55
CDY12448	Canola	plastid	51.31	43.95
CDY52183	Canola	plastid	51.31	43.95
Bra039878.1-P	Field mustard	plastid	51.05	43.82
TraesCS7B01G384000.1	Wheat	extracellular, plasma membrane, plastid	51.83	40.99
GSMUA_Achr1P09520_001	Banana	cytosol	21.47	23.5
GSMUA_AchrUn_...	Banana	cytosol	21.73	21.56
GSMUA_Achr9P05330_001	Banana	cytosol	20.68	19.65
GSMUA_Achr10P...	Banana	cytosol	19.9	18.49
GSMUA_Achr7P10710_001	Banana	cytosol	17.02	17.33
GSMUA_Achr7P11470_001	Banana	nucleus	15.97	17.33
GSMUA_Achr6P14190_001	Banana	cytosol	15.71	15.79
GSMUA_Achr10P...	Banana	cytosol	15.71	15.79
GSMUA_Achr3P03450_001	Banana	cytosol	15.18	15.63
GSMUA_Achr8P27920_001	Banana	golgi, mitochondrion, plasma membrane, plastid	16.49	11.71

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.3	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0006464
GO:GO:0008134	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031146	EnsemblPlantsGene:GSMUA_Achr3G23630_001	EnsemblPlants:GSMUA_Achr3P23630_001
EnsemblPlants:GSMUA_Achr3T23630_001	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	UniProt:M0SH79	PFAM:PF12937
PFscan:PS50181	PANTHER:PTHR45371	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI000296BD64
SEG:seg	:	:	:	:	:

Description

Putative Protein UNUSUAL FLORAL ORGANS [Source:GMGC_GENE;Acc:GSMUA_Achr3G23630_001]

Coordinates

chr3:-:24430131..24431459

Molecular Weight (calculated)

41288.0 Da

IEP (calculated)

8.371

GRAVY (calculated)

0.172

Length

382 amino acids

Sequence
(BLAST)

001: MEEAFAAAMT AATSSSSAIP MDPRIWRHLP QGLVDRVLAF LPPAAFFRAR AVCKRWYALV FSDSFLELHL RLAPTLPCFA FFLLPSKPPL YSTSAASSPP
101: PAPALLLDPT LVLCNLLSKL ASQLPPTPTP RLFPTVGLTV GPSSISAVVA GDDMISPFAV KNLTAECFHA DGVTGFYSPW ATGSALPRLC SFEPGRMAYA
201: AGRFYCMSCG PFGVMAYDVG TNAWEKIQPP MRRFLRSPSI VECGGGRVVL VAAVEKSKLS VPRSVRMWAL QPCGRAWAEI DRMPHDVHAQ FSEAEGGRGF
301: ECVGHGDFLA ITIKGSNDVL LFDFYRKEWR WAPPCRFLHG GGSSSSSGCG GLRGFAYEPR LATPCMALLD SSSFIPFQGF SG

Best Arabidopsis Sequence Match ( AT1G30950.1 )
(BLAST)

001: MDSTVFINNP SLTLPFSYTF TSSSNSSTTT STTTDSSSGQ WMDGRIWSKL PPPLLDRVIA FLPPPAFFRT RCVCKRFYSL LFSNTFLETY LQLLPLRHNC
101: FLFFKHKTLK SYIYKRGGTN DDDSNKAEGF LFDPNEIRWY RLSFAYIPSG FYPSGSSGGL VSWVSEEAGL KTILLCNPLV GSVSQLPPIS RPRLFPSIGL
201: SVTPTSIDVT VAGDDLISPY AVKNLSSESF HVDAGGFFSL WAMTSSLPRL CSLESGKMVY VQGKFYCMNY SPFSVLSYEV TGNRWIKIQA PMRRFLRSPS
301: LLESKGRLIL VAAVEKSKLN VPKSLRLWSL QQDNATWVEI ERMPQPLYTQ FAAEEGGKGF ECVGNQEFVM IVLRGTSLQL LFDIVRKSWL WVPPCPYSGS
401: GGGSSGGGSD GEVLQGFAYD PVLTTPVVSL LDQLTLPFPG VC

Arabidopsis Description

UFOUncharacterized protein At1g30950 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUY4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.