Factsheet for Zm00001d046950_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

cytosol 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002
Zm00001d003685_P001
Zm00001d025407_P001
Zm00001d027359_P001
Zm00001d028143_P002
Zm00001d031323_P001
Zm00001d036425_P002
Zm00001d042193_P001
Zm00001d048502_P002
Zm00001d052848_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30950.1	Zm00001d002027_P002	AT1G22920.1	12724534
AT1G30950.1	Zm00001d036425_P002	AT3G54340.1	18287201
AT1G30950.1	Zm00001d027359_P001	AT3G61140.1	12724534
AT1G30950.1	Zm00001d048502_P002	AT3G61140.1	12724534
AT1G30950.1	Zm00001d042193_P001	AT4G02570.1	12724534
AT1G30950.1	Zm00001d003685_P001	AT4G14110.1	12724534
AT1G30950.1	Zm00001d025407_P001	AT4G14110.1	12724534
AT1G30950.1	Zm00001d028143_P002	AT5G42970.1	12724534
AT1G30950.1	Zm00001d031323_P001	AT5G56280.1	12724534
AT1G30950.1	Zm00001d052848_P004	AT5G56280.1	12724534

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU76836	Sorghum	plastid	94.0	94.43
Zm00001d036653_P001	Maize	plastid	91.92	91.28
Os06t0665400-01	Rice	plastid	82.45	83.22
TraesCS7A01G481600.1	Wheat	plastid	79.91	78.64
TraesCS7D01G468700.1	Wheat	plastid	79.68	78.41
HORVU7Hr1G108970.1	Barley	cytosol, plasma membrane, plastid	79.21	78.31
TraesCS7B01G384000.1	Wheat	extracellular, plasma membrane, plastid	80.83	72.46
GSMUA_Achr3P23630_001	Banana	plastid	45.27	51.31
KRH58532	Soybean	plastid	42.03	42.33
AT1G30950.1	Thale cress	plastid	42.73	41.86
VIT_01s0011g01220.t01	Wine grape	plastid	41.8	41.51
KRH42420	Soybean	plastid	41.8	41.14
CDY12448	Canola	plastid	41.34	40.13
CDY52183	Canola	plastid	41.34	40.13
Bra039878.1-P	Field mustard	plastid	41.11	40.0
Solyc02g081670.1.1	Tomato	plastid	41.11	39.12
PGSC0003DMT400045739	Potato	plastid	41.11	38.86
Zm00001d043989_P001	Maize	cytosol	19.17	20.65
Zm00001d026557_P001	Maize	cytosol, mitochondrion, plastid	19.63	20.24
Zm00001d026558_P001	Maize	cytosol, mitochondrion, plastid	19.63	20.24
Zm00001d029442_P001	Maize	cytosol, nucleus, plastid	18.48	19.95
Zm00001d011994_P001	Maize	cytosol	19.4	18.96
Zm00001d016066_P001	Maize	cytosol	17.78	18.55
Zm00001d006874_P001	Maize	cytosol	17.09	18.27
Zm00001d022151_P001	Maize	cytosol, mitochondrion, plastid	16.63	17.35
Zm00001d053358_P001	Maize	cytosol	15.94	17.04
Zm00001d042309_P001	Maize	cytosol	18.48	16.95

Protein Annotations

EnsemblPlants:Zm00001d046950_P001	EnsemblPlants:Zm00001d046950_T001	EnsemblPlantsGene:Zm00001d046950	EntrezGene:103638875	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	PANTHER:PTHR45371
PFAM:PF00646	PFscan:PS50181	ProteinID:AQL05236.1	SEG:seg	SMART:SM00256	SUPFAM:SSF50965
SUPFAM:SSF81383	UniParc:UPI000220C754	UniProt:K7VBY2	MapMan:19.2.2.8.1.4.3	:	:

Description

Protein UNUSUAL FLORAL ORGANS

Coordinates

chr9:-:112393237..112394668

Molecular Weight (calculated)

45919.5 Da

IEP (calculated)

9.991

GRAVY (calculated)

0.184

Length

433 amino acids

Sequence
(BLAST)

001: MMHQHHPHHL PRFHSPLSSS SEAVDMDPRV WGRLPQPLVD RVLACLPTPS FLRLRATCRR FCSLIYSSPF LHSHLLLSPH LPFFAFAVPS AGYLLLLDPT
101: RQAPSWSRLP LPLPAPGAGQ GFSPAAASAG LLAFLSDASG HKTLLLANPI TRLLAPLPLC PTARLSPTVG LAAGPTSFIA VIAGDDLVSP FAVKNISADT
201: FVADAASVPP SGFWAPSSIL PRLSSLDPRA GMAFASGRFY CMSSSPFAVL VFDVAANVWS KVQPPMRRFL RSPALVEFGG GREREARVAL VSAVEKSRLS
301: VPRSVRMWTL RGGGHGVAGG SSGSGAWTEV ARMPADVHAH FAAAEGGRGF ECAAHGDFVV LAPRGPASPV LVFDSRRDEW RWAPPCPYNP YVGGIAAGGP
401: GFRVFAYEPR LATPAIGLLD ATAPAAFLHG MQG

Best Arabidopsis Sequence Match ( AT1G30950.1 )
(BLAST)

001: MDSTVFINNP SLTLPFSYTF TSSSNSSTTT STTTDSSSGQ WMDGRIWSKL PPPLLDRVIA FLPPPAFFRT RCVCKRFYSL LFSNTFLETY LQLLPLRHNC
101: FLFFKHKTLK SYIYKRGGTN DDDSNKAEGF LFDPNEIRWY RLSFAYIPSG FYPSGSSGGL VSWVSEEAGL KTILLCNPLV GSVSQLPPIS RPRLFPSIGL
201: SVTPTSIDVT VAGDDLISPY AVKNLSSESF HVDAGGFFSL WAMTSSLPRL CSLESGKMVY VQGKFYCMNY SPFSVLSYEV TGNRWIKIQA PMRRFLRSPS
301: LLESKGRLIL VAAVEKSKLN VPKSLRLWSL QQDNATWVEI ERMPQPLYTQ FAAEEGGKGF ECVGNQEFVM IVLRGTSLQL LFDIVRKSWL WVPPCPYSGS
401: GGGSSGGGSD GEVLQGFAYD PVLTTPVVSL LDQLTLPFPG VC

Arabidopsis Description

UFOUncharacterized protein At1g30950 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUY4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.