Factsheet for Zm00001d029442_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG39191	Sorghum	nucleus	88.03	84.05
Os03t0399400-01	Rice	mitochondrion	77.06	75.74
TraesCS5B01G100300.1	Wheat	cytosol, plastid	70.32	70.15
TraesCS5D01G106500.1	Wheat	cytosol	71.32	63.56
TraesCS5A01G094200.1	Wheat	cytosol	70.07	62.17
Zm00001d006874_P001	Maize	cytosol	62.34	61.73
Zm00001d022151_P001	Maize	cytosol, mitochondrion, plastid	63.59	61.45
HORVU5Hr1G025530.5	Barley	cytosol	57.11	56.4
GSMUA_Achr7P11470_001	Banana	nucleus	42.64	48.58
GSMUA_Achr10P...	Banana	cytosol	46.63	45.5
KRH15707	Soybean	cytosol	46.13	45.45
KRH05328	Soybean	cytosol	45.64	44.96
VIT_04s0008g03190.t01	Wine grape	cytosol	45.14	44.47
KRH52288	Soybean	cytosol	44.14	42.86
KRH61620	Soybean	cytosol	44.14	42.86
CDY71979	Canola	cytosol	40.65	41.37
Bra037018.1-P	Field mustard	cytosol	40.4	41.22
CDX72391	Canola	cytosol	40.15	40.76
CDX75335	Canola	nucleus	40.65	39.95
CDX68951	Canola	cytosol	40.9	39.9
Bra011423.1-P	Field mustard	nucleus	40.4	39.71
Solyc08g067300.1.1	Tomato	nucleus	40.9	39.61
PGSC0003DMT400019032	Potato	nucleus	40.4	38.76
AT4G33160.2	Thale cress	cytosol	40.9	31.66
Zm00001d043989_P001	Maize	cytosol	21.95	21.89
Zm00001d053358_P001	Maize	cytosol	20.45	20.25
Zm00001d026557_P001	Maize	cytosol, mitochondrion, plastid	20.45	19.52
Zm00001d026558_P001	Maize	cytosol, mitochondrion, plastid	20.45	19.52
Zm00001d036653_P001	Maize	plastid	20.7	19.04
Zm00001d016066_P001	Maize	cytosol	19.2	18.55
Zm00001d046950_P001	Maize	cytosol, mitochondrion, plastid	19.95	18.48
Zm00001d011994_P001	Maize	cytosol	19.95	18.06
Zm00001d042309_P001	Maize	cytosol	19.7	16.74

Protein Annotations

EMBL:BT064846	EnsemblPlants:Zm00001d029442_P001	EnsemblPlants:Zm00001d029442_T001	EnsemblPlantsGene:Zm00001d029442	EntrezGene:100382595	Gene3D:1.20.1280.50
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:Gal_Oxase/kelch_b-propeller
InterPro:IPR001810	PANTHER:PTHR45094	PFAM:PF00646	ProteinID:ONL98750.1	SEG:seg	SMART:SM00256
SUPFAM:SSF50965	SUPFAM:SSF81383	UniParc:UPI000194B421	UniProt:C0P977	MapMan:35.1	:

Description

F-box only protein 13

Coordinates

chr1:-:70784191..70785951

Molecular Weight (calculated)

42718.4 Da

IEP (calculated)

6.248

GRAVY (calculated)

-0.040

Length

401 amino acids

Sequence
(BLAST)

001: MEAPRANNGR KRKPTPPAGL GALHDDLLER VLARLPPATY FRLRAVCSRW RAAAASPTFL HACARVPSRD PWFLMLSDSD SGPRPPVAFD AAGRTWNRCH
101: AAPGAAVPVA ASAGLVLYRA PATGALTVAN PLTGASRALP SPPQAARQLQ AIAMYGAGGP YRVALFAGDL PDDLSMAVYD SSSDSWEGPL PLARRPGDSS
201: CPDAPAPDDT VYFLSKSGDV VSTNMQRSAS KQYSSSVVVR RDVDGDADAA FAYFLSYSGT VVACDTARRT FAELPRILPV YFEYSIDVVA CGAAAYAVVL
301: SEYLGTASLR VWEFAGGAWR QVAAMPPAMS HGFHGTRPDI NCVGHGDRLM VCVTSAEANA CFMCDVASNQ WEELPKYVNA DGEASEFLAA FSFEPRVEVT
401: V

Best Arabidopsis Sequence Match ( AT4G33160.1 )
(BLAST)

001: MPSSATSTYL LSLKQVSLTA SSPLLLQLKD RFFHQPKLLN MGFSTGKRKS RDEEEDRVSF FASEFPMDDL NDDVLERVLS WLPTSCFFRM SSVCKRWKSS
101: QTSKSFKLAC SQIPTRDPWF FMIDNDSNSS SFVFDSTENS WKNLNRRDFL HHHRQDFIPV ASSGGLLCYR CSISGDFLLR NPLTGSSRDI PSQDNNNNKP
201: LQAVAMTTTT VTPSSYTLVT ISGEIPNLSF KIYESNADSW SKDQELESVK NNDSSLHDDY DTDSGTVYFL SKQGNVVVAS NNLQRSPSKQ YSSVITVTDE
301: AEIVYFLSSY GTIVACDLTK RCFTELPKLL PPFLEYSIDL VECEGTMYVI LLSEFFESAS LRIWRLDNNR EWVQVGMLPP ALSHELYGKK GDINCVGGAG
401: NKILVCFNAS PPEVYCRYFV YDLVAEEWNE LPKCFKDGEA VDFVSALSFQ PRIEATV

Arabidopsis Description

F-box family protein [Source:TAIR;Acc:AT4G33160]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.