Factsheet for TraesCS5A01G094200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G100300.1	Wheat	cytosol, plastid	84.73	95.27
TraesCS5D01G106500.1	Wheat	cytosol	93.81	94.22
Os03t0399400-01	Rice	mitochondrion	64.38	71.32
Zm00001d029442_P001	Maize	cytosol, nucleus, plastid	62.17	70.07
KXG39191	Sorghum	nucleus	63.72	68.57
HORVU5Hr1G025530.5	Barley	cytosol	59.96	66.75
TraesCS2A01G167400.1	Wheat	cytosol	56.64	61.39
GSMUA_Achr7P11470_001	Banana	nucleus	36.5	46.88
KRH15707	Soybean	cytosol	40.27	44.72
GSMUA_Achr10P...	Banana	cytosol	39.82	43.8
VIT_04s0008g03190.t01	Wine grape	cytosol	39.38	43.73
KRH05328	Soybean	cytosol	39.16	43.49
KRH52288	Soybean	cytosol	38.72	42.37
KRH61620	Soybean	cytosol	38.27	41.89
CDY71979	Canola	cytosol	34.29	39.34
CDX72391	Canola	cytosol	34.29	39.24
Bra037018.1-P	Field mustard	cytosol	34.07	39.19
CDX68951	Canola	cytosol	34.29	37.71
CDX75335	Canola	nucleus	33.85	37.5
Bra011423.1-P	Field mustard	nucleus	33.85	37.5
Solyc08g067300.1.1	Tomato	nucleus	34.29	37.44
PGSC0003DMT400019032	Potato	nucleus	33.41	36.12
AT4G33160.2	Thale cress	cytosol	35.62	31.08
TraesCS3A01G239100.1	Wheat	cytosol	17.04	19.15
TraesCS3A01G435400.2	Wheat	cytosol	18.36	18.57
TraesCS7A01G481600.1	Wheat	plastid	17.7	18.18

Protein Annotations

EnsemblPlants:TraesCS5A01G094200.1	EnsemblPlantsGene:TraesCS5A01G094200	Gene3D:1.20.1280.50	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	PANTHER:PTHR45094	PFAM:PF00646	SEG:seg	SUPFAM:SSF50965	SUPFAM:SSF81383
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr5A:-:130285343..130286969

Molecular Weight (calculated)

48573.8 Da

IEP (calculated)

6.499

GRAVY (calculated)

-0.095

Length

452 amino acids

Sequence
(BLAST)

001: MSTKTKGVLP SHPSPPHGCK ATPDVTKGEE TQEAQGQRFQ EHTLPEPGAT MSGRMELSAH MSMAPATNGG KRRCSRPCLG DIHEDMLERV LARLPPASFF
101: RLRAVCREWR AVAASATFLD ACARVPPRDP WFLMLSERPH PVVAFDTDGR SWNACRAPTG SMPVAASGGL VLYSVLATGA LCVSNPLTGA SRALPMPPQG
201: QGQGVPQLHA IAMYGSLYRV ALFTGELSDL SMAVFDSSEG SWEGPVPLAR RSGTSSTDAP THGGDDTVYF LSKSGDVVAT NMKRSSLKQY SSAVVPSECG
301: AVVYFLSHSG TVLACDTASR TFAELPRILP VHFEYSIDVV ACNGASYAVV LSEYLDTASL RVWQFAEGAW RQVAAMPPGM AHGFYGKRAD INCVGHGDRV
401: MVCVSSGEVN GCFMCDVRSN QWEELPRCIN GDGEIIDFLA AFSFEPRVEI NV

Best Arabidopsis Sequence Match ( AT4G33160.1 )
(BLAST)

001: MPSSATSTYL LSLKQVSLTA SSPLLLQLKD RFFHQPKLLN MGFSTGKRKS RDEEEDRVSF FASEFPMDDL NDDVLERVLS WLPTSCFFRM SSVCKRWKSS
101: QTSKSFKLAC SQIPTRDPWF FMIDNDSNSS SFVFDSTENS WKNLNRRDFL HHHRQDFIPV ASSGGLLCYR CSISGDFLLR NPLTGSSRDI PSQDNNNNKP
201: LQAVAMTTTT VTPSSYTLVT ISGEIPNLSF KIYESNADSW SKDQELESVK NNDSSLHDDY DTDSGTVYFL SKQGNVVVAS NNLQRSPSKQ YSSVITVTDE
301: AEIVYFLSSY GTIVACDLTK RCFTELPKLL PPFLEYSIDL VECEGTMYVI LLSEFFESAS LRIWRLDNNR EWVQVGMLPP ALSHELYGKK GDINCVGGAG
401: NKILVCFNAS PPEVYCRYFV YDLVAEEWNE LPKCFKDGEA VDFVSALSFQ PRIEATV

Arabidopsis Description

F-box family protein [Source:TAIR;Acc:AT4G33160]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.