Factsheet for TraesCS5D01G106500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G100300.1	Wheat	cytosol, plastid	84.89	95.02
TraesCS5A01G094200.1	Wheat	cytosol	94.22	93.81
Os03t0399400-01	Rice	mitochondrion	65.56	72.3
Zm00001d029442_P001	Maize	cytosol, nucleus, plastid	63.56	71.32
KXG39191	Sorghum	nucleus	64.89	69.52
HORVU5Hr1G025530.5	Barley	cytosol	61.11	67.73
TraesCS2D01G175100.1	Wheat	cytosol	57.78	62.35
GSMUA_Achr7P11470_001	Banana	nucleus	37.11	47.44
KRH15707	Soybean	cytosol	40.67	44.96
GSMUA_Achr10P...	Banana	cytosol	40.44	44.28
KRH05328	Soybean	cytosol	40.0	44.23
VIT_04s0008g03190.t01	Wine grape	cytosol	39.56	43.73
KRH52288	Soybean	cytosol	39.78	43.34
KRH61620	Soybean	cytosol	39.11	42.62
CDY71979	Canola	cytosol	35.56	40.61
Bra037018.1-P	Field mustard	cytosol	35.33	40.46
CDX72391	Canola	cytosol	35.33	40.25
Solyc08g067300.1.1	Tomato	nucleus	35.78	38.89
PGSC0003DMT400019032	Potato	nucleus	35.11	37.8
Bra011423.1-P	Field mustard	nucleus	34.22	37.75
CDX68951	Canola	cytosol	34.22	37.47
CDX75335	Canola	nucleus	33.78	37.25
AT4G33160.2	Thale cress	cytosol	36.67	31.85
TraesCS2D01G541700.1	Wheat	mitochondrion	17.56	19.22
TraesCS3D01G428200.2	Wheat	cytosol	18.89	19.02
TraesCS3D01G239300.1	Wheat	cytosol	16.0	17.91
TraesCS7D01G468700.1	Wheat	plastid	17.33	17.73

Protein Annotations

EnsemblPlants:TraesCS5D01G106500.1	EnsemblPlantsGene:TraesCS5D01G106500	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	PANTHER:PTHR45094	PFAM:PF00646
PFscan:PS50181	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383	MapMan:35.1	:

Description

No Description!

Coordinates

chr5D:-:119913980..119915594

Molecular Weight (calculated)

48375.6 Da

IEP (calculated)

6.368

GRAVY (calculated)

-0.104

Length

450 amino acids

Sequence
(BLAST)

001: MSTQAKGVLS SHPSPPHGCK ATPDVTKGEE TQEAQGQRFQ EHTLPEPRAT MSGRMELSAQ MSMAPPTNGG KRRCSRPGLG DIHEDMLERV LARLPPASFF
101: RLRAVCREWR AVAASPTFLD ACARVPSRHP WFLMLSERPH PVVAFDAAGR SWNACRAPTG SMPVAASGGL VLYSVLATGA LCVSNPLTGA SRALPTPPQG
201: PGVPQLHAIA MYGSPYRVAL FTGELPDLSM AVFDSSEDSW EGPMPLARRS GTSSPDAPPH GGDETVYFLS KSGDVVATNM KRSSLKQYSS VVVPSECGAV
301: VYFLSHSGTV LACDTASRTF AELPRILPVH FEYSIDVVAC NGASYAVVLS EYLDTASLRV WQFAEGAWRQ VAAMPPGMAH GFYGKKADIN CVGHGDRVMV
401: CVSSGEFNGC FMCDVASNEW EELPRCINGD GEIIDFLAAF SFEPRVEINV

Best Arabidopsis Sequence Match ( AT4G33160.1 )
(BLAST)

001: MPSSATSTYL LSLKQVSLTA SSPLLLQLKD RFFHQPKLLN MGFSTGKRKS RDEEEDRVSF FASEFPMDDL NDDVLERVLS WLPTSCFFRM SSVCKRWKSS
101: QTSKSFKLAC SQIPTRDPWF FMIDNDSNSS SFVFDSTENS WKNLNRRDFL HHHRQDFIPV ASSGGLLCYR CSISGDFLLR NPLTGSSRDI PSQDNNNNKP
201: LQAVAMTTTT VTPSSYTLVT ISGEIPNLSF KIYESNADSW SKDQELESVK NNDSSLHDDY DTDSGTVYFL SKQGNVVVAS NNLQRSPSKQ YSSVITVTDE
301: AEIVYFLSSY GTIVACDLTK RCFTELPKLL PPFLEYSIDL VECEGTMYVI LLSEFFESAS LRIWRLDNNR EWVQVGMLPP ALSHELYGKK GDINCVGGAG
401: NKILVCFNAS PPEVYCRYFV YDLVAEEWNE LPKCFKDGEA VDFVSALSFQ PRIEATV

Arabidopsis Description

F-box family protein [Source:TAIR;Acc:AT4G33160]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.