Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G481600.1 | Wheat | plastid | 97.05 | 97.05 |
| HORVU7Hr1G108970.1 | Barley | cytosol, plasma membrane, plastid | 93.41 | 93.84 |
| TraesCS7B01G384000.1 | Wheat | extracellular, plasma membrane, plastid | 97.05 | 88.41 |
| Os06t0665400-01 | Rice | plastid | 80.45 | 82.52 |
| OQU76836 | Sorghum | plastid | 78.18 | 79.81 |
| Zm00001d046950_P001 | Maize | cytosol, mitochondrion, plastid | 78.41 | 79.68 |
| Zm00001d036653_P001 | Maize | plastid | 78.86 | 79.59 |
| GSMUA_Achr3P23630_001 | Banana | plastid | 44.55 | 51.31 |
| KRH58532 | Soybean | plastid | 42.73 | 43.72 |
| VIT_01s0011g01220.t01 | Wine grape | plastid | 42.95 | 43.35 |
| KRH42420 | Soybean | plastid | 42.5 | 42.5 |
| AT1G30950.1 | Thale cress | plastid | 42.27 | 42.08 |
| CDY12448 | Canola | plastid | 41.14 | 40.58 |
| CDY52183 | Canola | plastid | 41.14 | 40.58 |
| Bra039878.1-P | Field mustard | plastid | 40.91 | 40.45 |
| Solyc02g081670.1.1 | Tomato | plastid | 40.91 | 39.56 |
| PGSC0003DMT400045739 | Potato | plastid | 41.14 | 39.52 |
| TraesCS2D01G541700.1 | Wheat | mitochondrion | 19.77 | 21.17 |
| TraesCS3D01G239300.1 | Wheat | cytosol | 18.41 | 20.15 |
| TraesCS2D01G175100.1 | Wheat | cytosol | 18.41 | 19.42 |
| TraesCS5D01G106500.1 | Wheat | cytosol | 17.73 | 17.33 |
| TraesCS3D01G428200.2 | Wheat | cytosol | 17.5 | 17.23 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:19.2.2.8.1.4.3 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006464 |
| GO:GO:0008134 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0031146 | InterPro:Gal_Oxase/kelch_b-propeller | InterPro:IPR001810 | PFAM:PF00646 |
| PFscan:PS50181 | PANTHER:PTHR45371 | SMART:SM00256 | SUPFAM:SSF50965 | SUPFAM:SSF81383 | EnsemblPlantsGene:TraesCS7D01G468700 |
| EnsemblPlants:TraesCS7D01G468700.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7D:+:582136986..582138473
Molecular Weight (calculated)
46223.0 Da
IEP (calculated)
10.810
GRAVY (calculated)
0.212
Length
440 amino acids
Sequence
(BLAST)
(BLAST)
001: MNLLPHHHLS LPSGPGRRPS PAAAEVEMDP RVWRRLPQPL LDRVLACLPT PSFLRARAVC RRFYHLLFSS PFLHSHLLHS PHLPFFAFAV PSAGHLLLLD
101: PTSQPQGPSW FLLPLPIPGP AAGFSPAAAS AGLLAFLSDA SGHKTLLLAN PITRLLAALP LGPTQRLSPT VGLAAGSTSI IAVVAGDDLV SPFAVKNISV
201: DTFVADAASV PSSGFWVPSS LLPRLSSLDP RAGMAFASGR FYCMSSSPFA VLVFDVAANV WSKVQPPMRR FLRSPALVEL GGGREGSGTA RVGLVASVEK
301: SRLSVPRSVR VWTLRGRGAS GGGGGAWSEV GRMPQDVHTQ FAAAEGGRGF ECAAHGDFVV LAPRGGPATV PVPTTVLVFD SRRDEWRWAP PCPYVGHGMA
401: AVANGGGAGF RVLAYEPRLA TPAIGLLDAT TPVALHGMHG
101: PTSQPQGPSW FLLPLPIPGP AAGFSPAAAS AGLLAFLSDA SGHKTLLLAN PITRLLAALP LGPTQRLSPT VGLAAGSTSI IAVVAGDDLV SPFAVKNISV
201: DTFVADAASV PSSGFWVPSS LLPRLSSLDP RAGMAFASGR FYCMSSSPFA VLVFDVAANV WSKVQPPMRR FLRSPALVEL GGGREGSGTA RVGLVASVEK
301: SRLSVPRSVR VWTLRGRGAS GGGGGAWSEV GRMPQDVHTQ FAAAEGGRGF ECAAHGDFVV LAPRGGPATV PVPTTVLVFD SRRDEWRWAP PCPYVGHGMA
401: AVANGGGAGF RVLAYEPRLA TPAIGLLDAT TPVALHGMHG
001: MDSTVFINNP SLTLPFSYTF TSSSNSSTTT STTTDSSSGQ WMDGRIWSKL PPPLLDRVIA FLPPPAFFRT RCVCKRFYSL LFSNTFLETY LQLLPLRHNC
101: FLFFKHKTLK SYIYKRGGTN DDDSNKAEGF LFDPNEIRWY RLSFAYIPSG FYPSGSSGGL VSWVSEEAGL KTILLCNPLV GSVSQLPPIS RPRLFPSIGL
201: SVTPTSIDVT VAGDDLISPY AVKNLSSESF HVDAGGFFSL WAMTSSLPRL CSLESGKMVY VQGKFYCMNY SPFSVLSYEV TGNRWIKIQA PMRRFLRSPS
301: LLESKGRLIL VAAVEKSKLN VPKSLRLWSL QQDNATWVEI ERMPQPLYTQ FAAEEGGKGF ECVGNQEFVM IVLRGTSLQL LFDIVRKSWL WVPPCPYSGS
401: GGGSSGGGSD GEVLQGFAYD PVLTTPVVSL LDQLTLPFPG VC
101: FLFFKHKTLK SYIYKRGGTN DDDSNKAEGF LFDPNEIRWY RLSFAYIPSG FYPSGSSGGL VSWVSEEAGL KTILLCNPLV GSVSQLPPIS RPRLFPSIGL
201: SVTPTSIDVT VAGDDLISPY AVKNLSSESF HVDAGGFFSL WAMTSSLPRL CSLESGKMVY VQGKFYCMNY SPFSVLSYEV TGNRWIKIQA PMRRFLRSPS
301: LLESKGRLIL VAAVEKSKLN VPKSLRLWSL QQDNATWVEI ERMPQPLYTQ FAAEEGGKGF ECVGNQEFVM IVLRGTSLQL LFDIVRKSWL WVPPCPYSGS
401: GGGSSGGGSD GEVLQGFAYD PVLTTPVVSL LDQLTLPFPG VC
Arabidopsis Description
UFOUncharacterized protein At1g30950 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUY4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.