Factsheet for Os06t0665400-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0935300-02
Os03t0116500-01
Os03t0197400-01
Os04t0428900-01
Os04t0654700-02
Os05t0193900-00
Os06t0712700-01
Os08t0500000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30950.1	Os04t0654700-02	AT1G22920.1	12724534
AT1G30950.1	Os06t0712700-01	AT3G54340.1	18287201
AT1G30950.1	Os03t0116500-01	AT3G61140.1	12724534
AT1G30950.1	Os01t0935300-02	AT4G02570.1	12724534
AT1G30950.1	Os05t0193900-00	AT4G02570.1	12724534
AT1G30950.1	Os04t0428900-01	AT4G14110.1	12724534
AT1G30950.1	Os03t0197400-01	AT5G42970.1	12724534
AT1G30950.1	Os08t0500000-01	AT5G56280.1	12724534

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU76836	Sorghum	plastid	83.92	83.53
Zm00001d036653_P001	Maize	plastid	83.92	82.57
Zm00001d046950_P001	Maize	cytosol, mitochondrion, plastid	83.22	82.45
TraesCS7A01G481600.1	Wheat	plastid	82.98	80.91
TraesCS7D01G468700.1	Wheat	plastid	82.52	80.45
HORVU7Hr1G108970.1	Barley	cytosol, plasma membrane, plastid	81.59	79.91
TraesCS7B01G384000.1	Wheat	extracellular, plasma membrane, plastid	83.22	73.91
GSMUA_Achr3P23630_001	Banana	plastid	46.15	51.83
KRH58532	Soybean	plastid	43.59	43.49
VIT_01s0011g01220.t01	Wine grape	plastid	43.59	42.89
KRH42420	Soybean	plastid	43.36	42.27
AT1G30950.1	Thale cress	plastid	43.12	41.86
Bra039878.1-P	Field mustard	plastid	42.66	41.12
CDY52183	Canola	plastid	42.66	41.03
CDY12448	Canola	plastid	42.66	41.03
Solyc02g081670.1.1	Tomato	plastid	42.19	39.78
PGSC0003DMT400045739	Potato	plastid	42.42	39.74
Os07t0617700-01	Rice	cytosol	19.58	20.69
Os03t0399400-01	Rice	mitochondrion	19.35	20.34
Os04t0668600-01	Rice	plastid	19.58	20.0
Os01t0659900-01	Rice	cytosol	18.41	19.22
Os01t0923900-01	Rice	cytosol	18.41	17.83
Os02t0260200-01	Rice	cytosol, endoplasmic reticulum	16.78	17.65

Protein Annotations

MapMan:19.2.2.8.1.4.3	Gene3D:3.80.10.10	ProteinID:BAD45387.1	ProteinID:BAF75467.1	ProteinID:BAS99029.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006355	GO:GO:0006464	GO:GO:0008134	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0031146	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	EnsemblPlantsGene:Os06g0665400
EnsemblPlants:Os06t0665400-01	PFscan:PS50181	PANTHER:PTHR45371	UniProt:Q655Y0	SMART:SM00256	SUPFAM:SSF50965
SUPFAM:SSF81383	UniParc:UPI000043A295	SEG:seg	:	:	:

Description

ABERRANT PANICLE ORGANIZATION 1F-box protein, Inflorescence form, Loading resistance and grain yield (Os06t0665400-01)

Coordinates

chr6:-:27480082..27481453

Molecular Weight (calculated)

45024.5 Da

IEP (calculated)

10.274

GRAVY (calculated)

0.253

Length

429 amino acids

Sequence
(BLAST)

001: MMNPRRLPPL PSSTSSASAA DDMDPRVWRR LPQPLVDRIL ACLPTPSFLR LRAACRRFYH LLFSSPFLHS HLLLSPHLPF FAFVVPAAGH LLLLDPTATA
101: SWSRLPLPLP PVAGGPAAFS PAAASAGLLA FLSDASGHKT LLLANPITRL LAALPISPTP RLSPTVGLAA GPTSIIAVVA GDDLVSPFAV KNISADTFVA
201: DAASVPPSGF WAPSSLLPRL SSLDPRAGMA FASGRFYCMS SSPFAVLVFD VAENVWSKVQ PPMRRFLRSP ALVELGGGRE GAARVALVSA VEKSRLSVPR
301: SVRLWTLRGG GGGGGGGAWT EVARMPPEVH AQFAAAEGGR GFECAAHGDY VVLAPRGPVA QAPTSALVFD SRRDEWRWAP PCPYVVVAHH GGAGAAGFRV
401: FAYEPRLATP AIGLLDATAP VALHGMHDG

Best Arabidopsis Sequence Match ( AT1G30950.1 )
(BLAST)

001: MDSTVFINNP SLTLPFSYTF TSSSNSSTTT STTTDSSSGQ WMDGRIWSKL PPPLLDRVIA FLPPPAFFRT RCVCKRFYSL LFSNTFLETY LQLLPLRHNC
101: FLFFKHKTLK SYIYKRGGTN DDDSNKAEGF LFDPNEIRWY RLSFAYIPSG FYPSGSSGGL VSWVSEEAGL KTILLCNPLV GSVSQLPPIS RPRLFPSIGL
201: SVTPTSIDVT VAGDDLISPY AVKNLSSESF HVDAGGFFSL WAMTSSLPRL CSLESGKMVY VQGKFYCMNY SPFSVLSYEV TGNRWIKIQA PMRRFLRSPS
301: LLESKGRLIL VAAVEKSKLN VPKSLRLWSL QQDNATWVEI ERMPQPLYTQ FAAEEGGKGF ECVGNQEFVM IVLRGTSLQL LFDIVRKSWL WVPPCPYSGS
401: GGGSSGGGSD GEVLQGFAYD PVLTTPVVSL LDQLTLPFPG VC

Arabidopsis Description

UFOUncharacterized protein At1g30950 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUY4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.