Factsheet for PGSC0003DMT400045739

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
cytosol 1
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009510
PGSC0003DMT400013225
PGSC0003DMT400023896
PGSC0003DMT400056930
PGSC0003DMT400063662
PGSC0003DMT400069203
PGSC0003DMT400071374
PGSC0003DMT400076584

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30950.1	PGSC0003DMT400023896	AT1G22920.1	12724534
AT1G30950.1	PGSC0003DMT400069203	AT1G22920.1	12724534
AT1G30950.1	PGSC0003DMT400009510	AT3G54340.1	18287201
AT1G30950.1	PGSC0003DMT400071374	AT3G61140.1	12724534
AT1G30950.1	PGSC0003DMT400063662	AT4G02570.1	12724534
AT1G30950.1	PGSC0003DMT400076584	AT4G14110.1	12724534
AT1G30950.1	PGSC0003DMT400013225	AT5G42970.1	12724534
AT1G30950.1	PGSC0003DMT400056930	AT5G56280.1	12724534

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g081670.1.1	Tomato	plastid	96.51	97.14
VIT_01s0011g01220.t01	Wine grape	plastid	68.34	71.79
KRH58532	Soybean	plastid	64.41	68.6
KRH42420	Soybean	plastid	63.97	66.59
AT1G30950.1	Thale cress	plastid	57.21	59.28
CDY52183	Canola	plastid	57.21	58.74
Bra039878.1-P	Field mustard	plastid	56.99	58.65
CDY12448	Canola	plastid	56.99	58.52
GSMUA_Achr3P23630_001	Banana	plastid	46.07	55.24
Os06t0665400-01	Rice	plastid	39.74	42.42
HORVU7Hr1G108970.1	Barley	cytosol, plasma membrane, plastid	39.96	41.78
Zm00001d036653_P001	Maize	plastid	39.52	41.51
OQU76836	Sorghum	plastid	38.86	41.3
TraesCS7D01G468700.1	Wheat	plastid	39.52	41.14
Zm00001d046950_P001	Maize	cytosol, mitochondrion, plastid	38.86	41.11
TraesCS7A01G481600.1	Wheat	plastid	39.3	40.91
TraesCS7B01G384000.1	Wheat	extracellular, plasma membrane, plastid	39.3	37.27
PGSC0003DMT400000251	Potato	cytosol	20.31	22.96
PGSC0003DMT400027543	Potato	cytosol	18.34	22.05
PGSC0003DMT400003737	Potato	cytosol	20.96	21.92
PGSC0003DMT400084722	Potato	cytosol, mitochondrion	20.09	19.74
PGSC0003DMT400019032	Potato	nucleus	16.81	18.42

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102600108	MapMan:19.2.2.8.1.4.3	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355
GO:GO:0006464	GO:GO:0008134	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031146	InterPro:Gal_Oxase/kelch_b-propeller
InterPro:IPR001810	UniProt:M1BI49	PFAM:PF00646	EnsemblPlantsGene:PGSC0003DMG400017736	PGSC:PGSC0003DMG400017736	EnsemblPlants:PGSC0003DMT400045739
PFscan:PS50181	PANTHER:PTHR45371	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383	UniParc:UPI000296D867
RefSeq:XP_006363189.1	SEG:seg	:	:	:	:

Description

ANANTHA [Source:PGSC_GENE;Acc:PGSC0003DMG400017736]

Coordinates

chr2:+:37454603..37456369

Molecular Weight (calculated)

51500.1 Da

IEP (calculated)

8.633

GRAVY (calculated)

-0.018

Length

458 amino acids

Sequence
(BLAST)

001: MEAFHHAPIS FHFPYAFPIP TPTTNFLVTP NSSSINGMIN TWMDSRIWSR LPHRLIDRII AFLPPPAFFR ARAVCKRFYG LIYSTHFLEL YLQVSPKRNW
101: FIFFKQKVPR NNIYKNMMNS SSTNSGICSV EGYLFDPDNL SWYRLSFALI PQGFSPVSSS GGLICFVSDE SGSKNILLCN PLVGSIIPLP PTLRPRLFPS
201: IGLTITNTSI DLAVAGDDLI SPYAVKNLTT ESFHIDGNGF YSIWGTTSSL PRLCSFESGK MVHVQGRFYC MNFSPFSVLS YDIGTNNWCK IQAPMRRFLR
301: SPSLVEGNGK VVLVAAVEKS KLNVPRSLRL WALQDCGTMW LEIERMPQQL YVQFAEVENG QGFNCVGHGE YVVIMIKNNS DKALLFDFCK KRWIWIPPCP
401: FLGNNNNNLD YGGGSSNNYC GEFGVGGREL HGFGYDPRLA APIGALLDQL TLPFQSFN

Best Arabidopsis Sequence Match ( AT1G30950.1 )
(BLAST)

001: MDSTVFINNP SLTLPFSYTF TSSSNSSTTT STTTDSSSGQ WMDGRIWSKL PPPLLDRVIA FLPPPAFFRT RCVCKRFYSL LFSNTFLETY LQLLPLRHNC
101: FLFFKHKTLK SYIYKRGGTN DDDSNKAEGF LFDPNEIRWY RLSFAYIPSG FYPSGSSGGL VSWVSEEAGL KTILLCNPLV GSVSQLPPIS RPRLFPSIGL
201: SVTPTSIDVT VAGDDLISPY AVKNLSSESF HVDAGGFFSL WAMTSSLPRL CSLESGKMVY VQGKFYCMNY SPFSVLSYEV TGNRWIKIQA PMRRFLRSPS
301: LLESKGRLIL VAAVEKSKLN VPKSLRLWSL QQDNATWVEI ERMPQPLYTQ FAAEEGGKGF ECVGNQEFVM IVLRGTSLQL LFDIVRKSWL WVPPCPYSGS
401: GGGSSGGGSD GEVLQGFAYD PVLTTPVVSL LDQLTLPFPG VC

Arabidopsis Description

UFOUncharacterized protein At1g30950 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUY4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.