Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, extracellular
Predictor Summary:
Predictor Summary:
- plastid 4
- extracellular 2
- mitochondrion 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G481600.1 | Wheat | plastid | 89.03 | 97.73 |
| TraesCS7D01G468700.1 | Wheat | plastid | 88.41 | 97.05 |
| HORVU7Hr1G108970.1 | Barley | cytosol, plasma membrane, plastid | 85.51 | 94.29 |
| Os06t0665400-01 | Rice | plastid | 73.91 | 83.22 |
| Zm00001d046950_P001 | Maize | cytosol, mitochondrion, plastid | 72.46 | 80.83 |
| OQU76836 | Sorghum | plastid | 72.05 | 80.74 |
| Zm00001d036653_P001 | Maize | plastid | 72.67 | 80.5 |
| GSMUA_Achr3P23630_001 | Banana | plastid | 40.99 | 51.83 |
| KRH58532 | Soybean | plastid | 38.72 | 43.49 |
| VIT_01s0011g01220.t01 | Wine grape | plastid | 38.92 | 43.12 |
| KRH42420 | Soybean | plastid | 38.51 | 42.27 |
| AT1G30950.1 | Thale cress | plastid | 38.51 | 42.08 |
| CDY12448 | Canola | plastid | 37.68 | 40.81 |
| CDY52183 | Canola | plastid | 37.68 | 40.81 |
| Bra039878.1-P | Field mustard | plastid | 37.06 | 40.22 |
| Solyc02g081670.1.1 | Tomato | plastid | 37.06 | 39.34 |
| PGSC0003DMT400045739 | Potato | plastid | 37.27 | 39.3 |
| TraesCS5B01G100300.1 | Wheat | cytosol, plastid | 16.36 | 19.65 |
| TraesCS2B01G193700.1 | Wheat | cytosol | 16.56 | 19.28 |
| TraesCS3B01G267600.1 | Wheat | cytosol | 15.94 | 19.15 |
| TraesCS3B01G470300.2 | Wheat | cytosol | 16.15 | 17.45 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:19.2.2.8.1.4.3 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006464 |
| GO:GO:0008134 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0031146 | InterPro:Gal_Oxase/kelch_b-propeller | InterPro:IPR001810 | PFAM:PF00646 |
| PFscan:PS50181 | PANTHER:PTHR45371 | SMART:SM00256 | SUPFAM:SSF50965 | SUPFAM:SSF81383 | EnsemblPlantsGene:TraesCS7B01G384000 |
| EnsemblPlants:TraesCS7B01G384000.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7B:+:649950255..649951851
Molecular Weight (calculated)
50907.9 Da
IEP (calculated)
10.086
GRAVY (calculated)
0.238
Length
483 amino acids
Sequence
(BLAST)
(BLAST)
001: MQVEYFLCPL LLPVPPLHTC SSAHSLSLTL RASCLPLSIP QLTMNPHPHH HLSLPSGPGR RPSSAAEAVE MDPRVWRRLP QPLLDRVLAC LPTPSFLRAR
101: AVCRRFYHLL FSSPFLHSHL LHSPHLPFFA FAVPSAGHLL LLDPTSQPQG PSWFLLPLPI PGPAAGFSPA AAAAGLLAFL SDASGHKTLL LANPITRLLA
201: ALPLGPTQRL SPTVGLAAGS TSIIAVVAGD DLVSPFAVKN ISVDTFVADA ASVPSSGFWA PSSLLPRLSS LDPRAGMAFA SGRFYCMSSS PFAVLVFDVA
301: ANVWSKVQPP MRRFLRSPAL VELGGGREGS GTARVGLVAS VEKSRLSVPR SVRVWTLRGR GASGGGGGAW SEVARMPQDV HAQFAAAEGG RGFECAAHGD
401: FVVLAPRGGP AAMPVPTTVL VFDSRRDEWR WAPPCPYVGH GMAAVVNGGG NGFRVLAYEP RLATPAIGLL DATTPVALHG MHG
101: AVCRRFYHLL FSSPFLHSHL LHSPHLPFFA FAVPSAGHLL LLDPTSQPQG PSWFLLPLPI PGPAAGFSPA AAAAGLLAFL SDASGHKTLL LANPITRLLA
201: ALPLGPTQRL SPTVGLAAGS TSIIAVVAGD DLVSPFAVKN ISVDTFVADA ASVPSSGFWA PSSLLPRLSS LDPRAGMAFA SGRFYCMSSS PFAVLVFDVA
301: ANVWSKVQPP MRRFLRSPAL VELGGGREGS GTARVGLVAS VEKSRLSVPR SVRVWTLRGR GASGGGGGAW SEVARMPQDV HAQFAAAEGG RGFECAAHGD
401: FVVLAPRGGP AAMPVPTTVL VFDSRRDEWR WAPPCPYVGH GMAAVVNGGG NGFRVLAYEP RLATPAIGLL DATTPVALHG MHG
001: MDSTVFINNP SLTLPFSYTF TSSSNSSTTT STTTDSSSGQ WMDGRIWSKL PPPLLDRVIA FLPPPAFFRT RCVCKRFYSL LFSNTFLETY LQLLPLRHNC
101: FLFFKHKTLK SYIYKRGGTN DDDSNKAEGF LFDPNEIRWY RLSFAYIPSG FYPSGSSGGL VSWVSEEAGL KTILLCNPLV GSVSQLPPIS RPRLFPSIGL
201: SVTPTSIDVT VAGDDLISPY AVKNLSSESF HVDAGGFFSL WAMTSSLPRL CSLESGKMVY VQGKFYCMNY SPFSVLSYEV TGNRWIKIQA PMRRFLRSPS
301: LLESKGRLIL VAAVEKSKLN VPKSLRLWSL QQDNATWVEI ERMPQPLYTQ FAAEEGGKGF ECVGNQEFVM IVLRGTSLQL LFDIVRKSWL WVPPCPYSGS
401: GGGSSGGGSD GEVLQGFAYD PVLTTPVVSL LDQLTLPFPG VC
101: FLFFKHKTLK SYIYKRGGTN DDDSNKAEGF LFDPNEIRWY RLSFAYIPSG FYPSGSSGGL VSWVSEEAGL KTILLCNPLV GSVSQLPPIS RPRLFPSIGL
201: SVTPTSIDVT VAGDDLISPY AVKNLSSESF HVDAGGFFSL WAMTSSLPRL CSLESGKMVY VQGKFYCMNY SPFSVLSYEV TGNRWIKIQA PMRRFLRSPS
301: LLESKGRLIL VAAVEKSKLN VPKSLRLWSL QQDNATWVEI ERMPQPLYTQ FAAEEGGKGF ECVGNQEFVM IVLRGTSLQL LFDIVRKSWL WVPPCPYSGS
401: GGGSSGGGSD GEVLQGFAYD PVLTTPVVSL LDQLTLPFPG VC
Arabidopsis Description
UFOUncharacterized protein At1g30950 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUY4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.