Factsheet for Bra039878.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000874.1-P
Bra002827.1-P
Bra003438.1-P
Bra003735.1-P	nucleus
Bra007067.1-P
Bra007576.1-P
Bra008231.1-P	nucleus
Bra012213.1-P	nucleus, nucleus
Bra012214.1-P	nucleus, nucleus
Bra012216.1-P	nucleus, nucleus
Bra012351.1-P
Bra014519.1-P	nucleus
Bra014822.1-P
Bra015801.1-P	nucleus
Bra024548.1-P
Bra025795.1-P	nucleus, nucleus
Bra032760.1-P
Bra033654.1-P
Bra035336.1-P
Bra036257.1-P
Bra038444.1-P
Bra039504.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30950.1	Bra012213.1-P	AT1G20140.1	23226441
AT1G30950.1	Bra012214.1-P	AT1G20140.1	23226441
AT1G30950.1	Bra012216.1-P	AT1G20140.1	23226441
AT1G30950.1	Bra025795.1-P	AT1G20140.1	23226441
AT1G30950.1	Bra012351.1-P	AT1G22920.1	12724534
AT1G30950.1	Bra024548.1-P	AT1G22920.1	12724534
AT1G30950.1	Bra003735.1-P	AT1G75950.1	12169662
AT1G30950.1	Bra008231.1-P	AT1G75950.1	12169662
AT1G30950.1	Bra015801.1-P	AT1G75950.1	12169662
AT1G30950.1	Bra003735.1-P	AT1G75950.1	12724534
AT1G30950.1	Bra008231.1-P	AT1G75950.1	12724534
AT1G30950.1	Bra015801.1-P	AT1G75950.1	12724534
AT1G30950.1	Bra003735.1-P	AT1G75950.1	12795696
AT1G30950.1	Bra008231.1-P	AT1G75950.1	12795696
AT1G30950.1	Bra015801.1-P	AT1G75950.1	12795696
AT1G30950.1	Bra003735.1-P	AT1G75950.1	12826617
AT1G30950.1	Bra008231.1-P	AT1G75950.1	12826617
AT1G30950.1	Bra015801.1-P	AT1G75950.1	12826617
AT1G30950.1	Bra003735.1-P	AT1G75950.1	15749712
AT1G30950.1	Bra008231.1-P	AT1G75950.1	15749712
AT1G30950.1	Bra015801.1-P	AT1G75950.1	15749712
AT1G30950.1	Bra003735.1-P	AT1G75950.1	23226441
AT1G30950.1	Bra008231.1-P	AT1G75950.1	23226441
AT1G30950.1	Bra015801.1-P	AT1G75950.1	23226441
AT1G30950.1	Bra039504.1-P	AT2G03160.1	12795696
AT1G30950.1	Bra039504.1-P	AT2G03170.1	12795696
AT1G30950.1	Bra012213.1-P	AT2G25700.1	23226441
AT1G30950.1	Bra012214.1-P	AT2G25700.1	23226441
AT1G30950.1	Bra012216.1-P	AT2G25700.1	23226441
AT1G30950.1	Bra025795.1-P	AT2G25700.1	23226441
AT1G30950.1	Bra014519.1-P	AT3G21850.1	23226441
AT1G30950.1	Bra007067.1-P	AT3G54340.1	18287201
AT1G30950.1	Bra014822.1-P	AT3G54340.1	18287201
AT1G30950.1	Bra003438.1-P	AT3G61140.1	12724534
AT1G30950.1	Bra007576.1-P	AT3G61140.1	12724534
AT1G30950.1	Bra000874.1-P	AT4G02570.1	12724534
AT1G30950.1	Bra036257.1-P	AT4G02570.1	12724534
AT1G30950.1	Bra032760.1-P	AT4G14110.1	12724534
AT1G30950.1	Bra038444.1-P	AT4G14110.1	12724534
AT1G30950.1	Bra033654.1-P	AT5G42970.1	12724534
AT1G30950.1	Bra035336.1-P	AT5G42970.1	12724534
AT1G30950.1	Bra002827.1-P	AT5G56280.1	12724534

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52183	Canola	plastid	98.88	98.65
CDY12448	Canola	plastid	98.43	98.21
AT1G30950.1	Thale cress	plastid	91.01	91.63
KRH58532	Soybean	plastid	64.49	66.74
VIT_01s0011g01220.t01	Wine grape	plastid	64.94	66.28
KRH42420	Soybean	plastid	63.15	63.86
Solyc02g081670.1.1	Tomato	plastid	58.43	57.14
PGSC0003DMT400045739	Potato	plastid	58.65	56.99
GSMUA_Achr3P23630_001	Banana	plastid	43.82	51.05
Os06t0665400-01	Rice	plastid	41.12	42.66
HORVU7Hr1G108970.1	Barley	cytosol, plasma membrane, plastid	40.67	41.32
OQU76836	Sorghum	plastid	40.0	41.3
Zm00001d046950_P001	Maize	cytosol, mitochondrion, plastid	40.0	41.11
TraesCS7A01G481600.1	Wheat	plastid	40.45	40.91
TraesCS7D01G468700.1	Wheat	plastid	40.45	40.91
Zm00001d036653_P001	Maize	plastid	39.78	40.6
TraesCS7B01G384000.1	Wheat	extracellular, plasma membrane, plastid	40.22	37.06
Bra006317.1-P	Field mustard	cytosol, plastid	23.82	24.37
Bra003458.1-P	Field mustard	nucleus	21.57	23.53
Bra007616.1-P	Field mustard	cytosol	21.12	23.27
Bra027473.1-P	Field mustard	plastid	17.98	22.41
Bra014429.1-P	Field mustard	cytosol	20.9	22.09
Bra011423.1-P	Field mustard	nucleus	18.88	20.59
Bra030038.1-P	Field mustard	nucleus, plastid	21.35	20.56
Bra032820.1-P	Field mustard	nucleus	21.12	20.22
Bra037018.1-P	Field mustard	cytosol	17.08	19.34

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.3	Gene3D:2.120.10.80	ProteinID:AAO84017	ProteinID:AAO84017.1	EMBL:AY232728
EnsemblPlantsGene:Bra039878	EnsemblPlants:Bra039878.1	EnsemblPlants:Bra039878.1-P	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355
GO:GO:0006464	GO:GO:0008134	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031146	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	UniProt:M4FFK4	PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR45371
SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI000254581F	SEG:seg	:

Description

AT1G30950 (E=3e-212) UFO | UFO (UNUSUAL FLORAL ORGANS); transcription factor binding / ubiquitin-protein ligase

Coordinates

chrA08:-:6100087..6101424

Molecular Weight (calculated)

49300.3 Da

IEP (calculated)

8.516

GRAVY (calculated)

-0.009

Length

445 amino acids

Sequence
(BLAST)

001: METNMFINNP SAHLPFSYTF TSSSNSSTTT STTTDSTSGQ WMDGRIWSKL PPSLLDRIIA FLPPPAFFRS RCVCKRFYGL LFSNTFLEIY LQLLPPRHNC
101: FLFFKHKTLK SYIYKRGGGG GANDDGSNKA EGFLFDPNEI RWYRLSFPYI PSGFYPSGSS GGLVSWVSEE AGLKTILLCN PLVGSVSQLP PMSRPRLFPS
201: IGLSVTPTSI DVTVAGDDLI SPYAVKNLSS ESFHVDAGGF FSLWAMASSL PRLCSLESGK MVYVGGKFYC MNYSPFSVLC YEVTGNRWIK IQAPMRRFLR
301: SPSLLESRGR LVLVAAVEKS KLNVPKSLRL WSLQQDNATW VEIERMPQPL YTQFAVEEGG KGFECVGNQE FVMIVLRRAS LQLLFDMVRK SWLWVPPCPY
401: GGSSSGAGSG GSEEEVLQGF AYDPVLTTPV VSLLDQLALP FPGAC

Best Arabidopsis Sequence Match ( AT1G30950.1 )
(BLAST)

001: MDSTVFINNP SLTLPFSYTF TSSSNSSTTT STTTDSSSGQ WMDGRIWSKL PPPLLDRVIA FLPPPAFFRT RCVCKRFYSL LFSNTFLETY LQLLPLRHNC
101: FLFFKHKTLK SYIYKRGGTN DDDSNKAEGF LFDPNEIRWY RLSFAYIPSG FYPSGSSGGL VSWVSEEAGL KTILLCNPLV GSVSQLPPIS RPRLFPSIGL
201: SVTPTSIDVT VAGDDLISPY AVKNLSSESF HVDAGGFFSL WAMTSSLPRL CSLESGKMVY VQGKFYCMNY SPFSVLSYEV TGNRWIKIQA PMRRFLRSPS
301: LLESKGRLIL VAAVEKSKLN VPKSLRLWSL QQDNATWVEI ERMPQPLYTQ FAAEEGGKGF ECVGNQEFVM IVLRGTSLQL LFDIVRKSWL WVPPCPYSGS
401: GGGSSGGGSD GEVLQGFAYD PVLTTPVVSL LDQLTLPFPG VC

Arabidopsis Description

UFOUncharacterized protein At1g30950 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUY4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.