Factsheet for Bra007616.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71729	Canola	mitochondrion	97.03	88.29
CDY11364	Canola	cytosol, golgi, nucleus	99.01	87.91
Bra003458.1-P	Field mustard	nucleus	88.61	87.75
Bra014429.1-P	Field mustard	cytosol	91.34	87.65
AT3G61590.4	Thale cress	plasma membrane	85.4	77.18
Solyc01g095370.2.1	Tomato	cytosol	67.57	67.57
PGSC0003DMT400000251	Potato	cytosol	67.57	67.41
KRH68853	Soybean	cytosol	63.86	64.02
KRG97101	Soybean	cytosol	63.86	63.7
VIT_02s0025g00830.t01	Wine grape	cytosol	62.62	62.32
GSMUA_Achr9P05330_001	Banana	cytosol	61.14	61.44
KRH47995	Soybean	cytosol	39.85	59.85
GSMUA_Achr3P03450_001	Banana	cytosol	53.71	58.49
GSMUA_Achr6P14190_001	Banana	cytosol	54.46	57.89
GSMUA_Achr10P...	Banana	cytosol	53.71	57.11
GSMUA_Achr7P10710_001	Banana	cytosol	52.97	57.07
Zm00001d043989_P001	Maize	cytosol	56.44	56.72
EES01202	Sorghum	cytosol	56.93	56.65
KXG29968	Sorghum	cytosol	57.18	56.62
Zm00001d053358_P001	Maize	cytosol	56.19	56.05
Os02t0260200-01	Rice	cytosol, endoplasmic reticulum	56.44	55.88
Zm00001d016066_P001	Maize	cytosol	57.18	55.66
TraesCS3A01G239100.1	Wheat	cytosol	55.2	55.47
TraesCS3D01G239300.1	Wheat	cytosol	55.2	55.47
HORVU3Hr1G059460.1	Barley	cytosol	54.7	54.98
TraesCS3B01G267600.1	Wheat	cytosol	54.7	54.98
Os01t0659900-01	Rice	cytosol	54.95	54.01
GSMUA_Achr8P27920_001	Banana	golgi, mitochondrion, plasma membrane, plastid	54.7	41.08
Bra027473.1-P	Field mustard	plastid	21.29	24.09
Bra006317.1-P	Field mustard	cytosol, plastid	24.5	22.76
Bra011423.1-P	Field mustard	nucleus	22.52	22.3
Bra032820.1-P	Field mustard	nucleus	24.75	21.51
Bra030038.1-P	Field mustard	nucleus, plastid	24.26	21.21
Bra039878.1-P	Field mustard	plastid	23.27	21.12
Bra037018.1-P	Field mustard	cytosol	19.8	20.36

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	EnsemblPlantsGene:Bra007616	EnsemblPlants:Bra007616.1	EnsemblPlants:Bra007616.1-P	InterPro:F-box-assoc_interact_dom
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:Gal_Oxase/kelch_b-propeller
InterPro:IPR001810	UniProt:M4CTS2	PFAM:PF12937	PFscan:PS50181	PANTHER:PTHR10706	PANTHER:PTHR10706:SF138
SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI00025429C8	SEG:seg

Description

AT3G61590 (E=6e-184) HWS, HS | HWS (HAWAIIAN SKIRT); ubiquitin-protein ligase

Coordinates

chrA09:+:30059362..30060576

Molecular Weight (calculated)

46269.8 Da

IEP (calculated)

6.255

GRAVY (calculated)

-0.311

Length

404 amino acids

Sequence
(BLAST)

001: MEAETSWTHY PYNYITYVPE ADPYSEPSDD ETKDQTFSMD TLLPDDLLER ILSFLPIASI FRAGTVCKRW NEIVSSRRFL WNFSSNNNNS ASQRPWYFMF
101: TTTDEPSGYA YDPVIKKWYT FDLPCIETSN WFVASSCGLV CFMDNDCRNK IYVSNPITKQ WRRLIEPPGH RSTDYTALST SMNRAKQSYS VSVVKSKQVQ
201: GNFFQWELSI HLYSSETMTW TTSLTDVLTG WRGGDESVII DNVLYFLIYS TGGNSDHRHG LIASNLSSTS SLMSSFIPMP CSLTCGRLMN LKERLVVVGG
301: IGKHDRPDII KGIGIWCLKG GREWQEMARM PQRYFQGFGE LDDVFASSGS DDVVYIQSYG SPALLMFDMK LKCWKWSQKC PVSKKFPLQL FTGFSFEPRL
401: EIAP

Best Arabidopsis Sequence Match ( AT3G61590.4 )
(BLAST)

001: MLDKVLILSL FFVFCIFDLP LCMYAKANLI DKRLLRMEAE TSWTNYPYSY ITYVPEAESY REQSDDEAKV ETFSMDSLLP DDLLERILSF LPIASIFRAG
101: TVCKRWNEIV SSRRFLCNFS NNSVSQRPWY FMFTTTDDPS GYAYDPIIRK WYSFDLPCIE TSNWFVASSC GLVCFMDNDC RNKIYVSNPI TKQWRTLIEP
201: PGHKSTDYTA MSTSVNRANQ AVNRANRSYS VSIVKSKQVP GNFFQWDLSI HLYSSETMTW TTLVNDVLSG WRGGNESVIC NNVLYFMIYS TGGSDHRHGL
301: IASNLSSIGS PSSGILMRSF IPMPCSLTCG RLMNLRERLV IVGGIGKHDR PEVIKGIGIW VLKGKEWVEM AKMPQRFFQG FGEFDEVFAS SGTDDLVYIQ
401: SYGSPALLTF DMNLKYWRWS QKCPVTKKFP LQLFTGFCFE PRLEIAP

Arabidopsis Description

HWSGalactose oxidase/kelch repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRL4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.