Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 7
- golgi 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89124 | Canola | cytosol | 78.3 | 85.57 |
| Bra007616.1-P | Field mustard | cytosol | 77.18 | 85.4 |
| CDY43939 | Canola | cytosol | 78.75 | 84.41 |
| Bra014429.1-P | Field mustard | cytosol | 79.42 | 84.32 |
| CDY52009 | Canola | nucleus | 76.73 | 84.28 |
| Bra003458.1-P | Field mustard | nucleus | 75.39 | 82.6 |
| CDY53910 | Canola | cytosol | 74.72 | 81.86 |
| CDX71729 | Canola | mitochondrion | 78.08 | 78.6 |
| CDY11364 | Canola | cytosol, golgi, nucleus | 77.85 | 76.48 |
| PGSC0003DMT400000251 | Potato | cytosol | 60.4 | 66.67 |
| Solyc01g095370.2.1 | Tomato | cytosol | 60.18 | 66.58 |
| KRH68853 | Soybean | cytosol | 57.94 | 64.27 |
| KRG97101 | Soybean | cytosol | 58.17 | 64.2 |
| VIT_02s0025g00830.t01 | Wine grape | cytosol | 57.27 | 63.05 |
| KRH47995 | Soybean | cytosol | 36.69 | 60.97 |
| GSMUA_Achr9P05330_001 | Banana | cytosol | 53.69 | 59.7 |
| GSMUA_Achr3P03450_001 | Banana | cytosol | 48.77 | 58.76 |
| GSMUA_Achr6P14190_001 | Banana | cytosol | 49.66 | 58.42 |
| GSMUA_Achr7P10710_001 | Banana | cytosol | 48.55 | 57.87 |
| GSMUA_Achr10P... | Banana | cytosol | 48.77 | 57.37 |
| Zm00001d043989_P001 | Maize | cytosol | 50.11 | 55.72 |
| EES01202 | Sorghum | cytosol | 50.34 | 55.42 |
| KXG29968 | Sorghum | cytosol | 50.11 | 54.9 |
| Os02t0260200-01 | Rice | cytosol, endoplasmic reticulum | 49.66 | 54.41 |
| Zm00001d053358_P001 | Maize | cytosol | 49.22 | 54.32 |
| TraesCS3A01G239100.1 | Wheat | cytosol | 48.55 | 53.98 |
| TraesCS3B01G267600.1 | Wheat | cytosol | 48.55 | 53.98 |
| TraesCS3D01G239300.1 | Wheat | cytosol | 48.55 | 53.98 |
| Zm00001d016066_P001 | Maize | cytosol | 49.89 | 53.73 |
| Os01t0659900-01 | Rice | cytosol | 49.22 | 53.53 |
| HORVU3Hr1G059460.1 | Barley | cytosol | 48.1 | 53.48 |
| GSMUA_Achr8P27920_001 | Banana | golgi, mitochondrion, plasma membrane, plastid | 50.78 | 42.19 |
| AT5G15710.2 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, plastid, vacuole | 23.27 | 23.21 |
| AT1G27340.1 | Thale cress | cytosol | 21.7 | 20.77 |
| AT1G30950.1 | Thale cress | plastid | 20.13 | 20.36 |
| AT5G43190.1 | Thale cress | mitochondrion | 18.34 | 20.35 |
| AT4G33160.2 | Thale cress | cytosol | 17.45 | 15.06 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:19.2.2.8.1.4.6 | EntrezGene:825332 | UniProt:A0A1I9LRL4 | ProteinID:AEE80227.1 | EMBL:AF386994 |
| ProteinID:ANM65222.1 | ArrayExpress:AT3G61590 | EnsemblPlantsGene:AT3G61590 | RefSeq:AT3G61590 | TAIR:AT3G61590 | RefSeq:AT3G61590-TAIR-G |
| EnsemblPlants:AT3G61590.4 | EMBL:BT000054 | ProteinID:CAB71089.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0006464 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0099402 | Symbol:HWS | InterPro:IPR001810 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | RefSeq:NP_001327208.1 | RefSeq:NP_191718.1 | ProteinID:OAP03392.1 | PFAM:PF00646 |
| PFscan:PS50181 | PANTHER:PTHR10706 | PANTHER:PTHR10706:SF138 | SMART:SM00256 | SUPFAM:SSF117281 | SUPFAM:SSF81383 |
| TMHMM:TMhelix | UniParc:UPI000848F60F | SEG:seg | : | : | : |
Description
HWSGalactose oxidase/kelch repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRL4]
Coordinates
chr3:+:22792112..22794341
Molecular Weight (calculated)
51233.5 Da
IEP (calculated)
7.541
GRAVY (calculated)
-0.111
Length
447 amino acids
Sequence
(BLAST)
(BLAST)
001: MLDKVLILSL FFVFCIFDLP LCMYAKANLI DKRLLRMEAE TSWTNYPYSY ITYVPEAESY REQSDDEAKV ETFSMDSLLP DDLLERILSF LPIASIFRAG
101: TVCKRWNEIV SSRRFLCNFS NNSVSQRPWY FMFTTTDDPS GYAYDPIIRK WYSFDLPCIE TSNWFVASSC GLVCFMDNDC RNKIYVSNPI TKQWRTLIEP
201: PGHKSTDYTA MSTSVNRANQ AVNRANRSYS VSIVKSKQVP GNFFQWDLSI HLYSSETMTW TTLVNDVLSG WRGGNESVIC NNVLYFMIYS TGGSDHRHGL
301: IASNLSSIGS PSSGILMRSF IPMPCSLTCG RLMNLRERLV IVGGIGKHDR PEVIKGIGIW VLKGKEWVEM AKMPQRFFQG FGEFDEVFAS SGTDDLVYIQ
401: SYGSPALLTF DMNLKYWRWS QKCPVTKKFP LQLFTGFCFE PRLEIAP
101: TVCKRWNEIV SSRRFLCNFS NNSVSQRPWY FMFTTTDDPS GYAYDPIIRK WYSFDLPCIE TSNWFVASSC GLVCFMDNDC RNKIYVSNPI TKQWRTLIEP
201: PGHKSTDYTA MSTSVNRANQ AVNRANRSYS VSIVKSKQVP GNFFQWDLSI HLYSSETMTW TTLVNDVLSG WRGGNESVIC NNVLYFMIYS TGGSDHRHGL
301: IASNLSSIGS PSSGILMRSF IPMPCSLTCG RLMNLRERLV IVGGIGKHDR PEVIKGIGIW VLKGKEWVEM AKMPQRFFQG FGEFDEVFAS SGTDDLVYIQ
401: SYGSPALLTF DMNLKYWRWS QKCPVTKKFP LQLFTGFCFE PRLEIAP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.