CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53910	Canola	cytosol	92.38	92.16
CDX89124	Canola	cytosol	87.47	87.04
CDY43939	Canola	cytosol	86.49	84.41
CDX71729	Canola	mitochondrion	85.75	78.6
AT3G61590.4	Thale cress	plasma membrane	84.28	76.73
CDY11364	Canola	cytosol, golgi, nucleus	85.75	76.7
PGSC0003DMT400000251	Potato	cytosol	64.13	64.44
Solyc01g095370.2.1	Tomato	cytosol	63.88	64.36
KRH68853	Soybean	cytosol	63.64	64.27
KRG97101	Soybean	cytosol	63.15	63.46
VIT_02s0025g00830.t01	Wine grape	cytosol	61.67	61.82
KRH47995	Soybean	cytosol	39.8	60.22
GSMUA_Achr9P05330_001	Banana	cytosol	59.46	60.2
GSMUA_Achr6P14190_001	Banana	cytosol	54.79	58.68
GSMUA_Achr3P03450_001	Banana	cytosol	52.83	57.95
EES01202	Sorghum	cytosol	56.76	56.9
GSMUA_Achr7P10710_001	Banana	cytosol	52.33	56.8
GSMUA_Achr10P...	Banana	cytosol	52.83	56.58
Zm00001d043989_P001	Maize	cytosol	55.53	56.22
KXG29968	Sorghum	cytosol	56.02	55.88
TraesCS3A01G239100.1	Wheat	cytosol	55.04	55.72
TraesCS3D01G239300.1	Wheat	cytosol	55.04	55.72
HORVU3Hr1G059460.1	Barley	cytosol	54.79	55.47
TraesCS3B01G267600.1	Wheat	cytosol	54.55	55.22
Zm00001d053358_P001	Maize	cytosol	54.3	54.57
Os02t0260200-01	Rice	cytosol, endoplasmic reticulum	54.55	54.41
Zm00001d016066_P001	Maize	cytosol	55.28	54.22
Os01t0659900-01	Rice	cytosol	54.55	54.01
GSMUA_Achr8P27920_001	Banana	golgi, mitochondrion, plasma membrane, plastid	53.81	40.71
CDY32964	Canola	plastid	22.85	23.37
CDY43599	Canola	plastid	22.6	22.83
CDX70633	Canola	cytosol, plastid	23.59	22.12
CDX78648	Canola	cytosol, plastid	23.59	22.07
CDY12448	Canola	plastid	23.59	21.52
CDY03911	Canola	nucleus, plastid	24.08	21.3
CDY52183	Canola	plastid	23.34	21.3
CDX84930	Canola	cytosol, plastid	24.32	21.2
CDY27608	Canola	nucleus	24.08	21.08
CDY15715	Canola	nucleus, plastid	23.83	20.91
CDX75335	Canola	nucleus	20.39	20.34
CDX68951	Canola	cytosol	19.9	19.71
CDX72391	Canola	cytosol	18.18	18.73
CDY71979	Canola	cytosol	17.94	18.53

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:2.120.10.80	UniProt:A0A078IRD9	EnsemblPlants:CDY52009	ProteinID:CDY52009
ProteinID:CDY52009.1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00004710001	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR10706	PANTHER:PTHR10706:SF138	SMART:SM00256	SUPFAM:SSF50965
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EF402E	:	:	:

Description

BnaC06g42890DBnaC06g42890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IRD9]

Coordinates

chrLK033047:-:35600..37943

Molecular Weight (calculated)

46201.9 Da

IEP (calculated)

7.021

GRAVY (calculated)

-0.240

Length

407 amino acids

Sequence
(BLAST)

001: MEAETSWTTY PYSYFTTHVP DAESYSEQSD DDETKVQTFS MDSLLPNDLL ERILTFLPIA SIFRAGTVCK RWNEIVSSQR FLSNFSNNNS VPQKPWYFMF
101: TTTDDPSGYA YDPVIRKWYG FDLPCIETWN WFVASSCGLV CFTDNDCRNK IYVSNPITKQ WRRLTEPPGH RSIDYASLST SVNRAKQSYS VSIVKSKQAP
201: GDFFQCEISV HLYSSETMTW TTRVTDVLTG WRGGDESVIC GNVLYFLIYS TGGSDHRHGL VALNLSSISS SKGILMRSFI PMPCSLTCGR LMNLKEKLVV
301: VGGIGKHDRP DIIKGIGVWV LKGGKEWQEV ARMPQRFFQG FGELDDVFAS SGSDDMVYVQ SYGSPALLTF DMKLKCWKWS QKCPVSKKFP LQLFTGFCFE
401: PRLEIAP

Best Arabidopsis Sequence Match ( AT3G61590.4 )
(BLAST)

001: MLDKVLILSL FFVFCIFDLP LCMYAKANLI DKRLLRMEAE TSWTNYPYSY ITYVPEAESY REQSDDEAKV ETFSMDSLLP DDLLERILSF LPIASIFRAG
101: TVCKRWNEIV SSRRFLCNFS NNSVSQRPWY FMFTTTDDPS GYAYDPIIRK WYSFDLPCIE TSNWFVASSC GLVCFMDNDC RNKIYVSNPI TKQWRTLIEP
201: PGHKSTDYTA MSTSVNRANQ AVNRANRSYS VSIVKSKQVP GNFFQWDLSI HLYSSETMTW TTLVNDVLSG WRGGNESVIC NNVLYFMIYS TGGSDHRHGL
301: IASNLSSIGS PSSGILMRSF IPMPCSLTCG RLMNLRERLV IVGGIGKHDR PEVIKGIGIW VLKGKEWVEM AKMPQRFFQG FGEFDEVFAS SGTDDLVYIQ
401: SYGSPALLTF DMNLKYWRWS QKCPVTKKFP LQLFTGFCFE PRLEIAP

Arabidopsis Description

HWSGalactose oxidase/kelch repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRL4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.