CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89124	Canola	cytosol	94.48	96.33
CDY52009	Canola	nucleus	84.41	86.49
CDY53910	Canola	cytosol	83.45	85.29
CDX71729	Canola	mitochondrion	86.81	81.53
CDY11364	Canola	cytosol, golgi, nucleus	86.81	79.56
AT3G61590.4	Thale cress	plasma membrane	84.41	78.75
Solyc01g095370.2.1	Tomato	cytosol	64.27	66.34
PGSC0003DMT400000251	Potato	cytosol	64.27	66.17
KRH68853	Soybean	cytosol	61.87	64.02
KRG97101	Soybean	cytosol	61.63	63.46
VIT_02s0025g00830.t01	Wine grape	cytosol	60.19	61.82
GSMUA_Achr9P05330_001	Banana	cytosol	59.23	61.44
KRH47995	Soybean	cytosol	38.13	59.11
GSMUA_Achr6P14190_001	Banana	cytosol	52.76	57.89
GSMUA_Achr3P03450_001	Banana	cytosol	51.32	57.68
GSMUA_Achr7P10710_001	Banana	cytosol	51.32	57.07
GSMUA_Achr10P...	Banana	cytosol	51.32	56.32
EES01202	Sorghum	cytosol	54.44	55.91
Zm00001d043989_P001	Maize	cytosol	53.72	55.72
TraesCS3B01G267600.1	Wheat	cytosol	53.48	55.47
TraesCS3D01G239300.1	Wheat	cytosol	53.48	55.47
KXG29968	Sorghum	cytosol	54.2	55.39
HORVU3Hr1G059460.1	Barley	cytosol	53.24	55.22
TraesCS3A01G239100.1	Wheat	cytosol	53.0	54.98
Zm00001d053358_P001	Maize	cytosol	52.52	54.07
Os01t0659900-01	Rice	cytosol	53.0	53.77
Zm00001d016066_P001	Maize	cytosol	53.24	53.49
Os02t0260200-01	Rice	cytosol, endoplasmic reticulum	52.28	53.43
GSMUA_Achr8P27920_001	Banana	golgi, mitochondrion, plasma membrane, plastid	53.72	41.64
CDX70633	Canola	cytosol, plastid	23.98	23.04
CDX78648	Canola	cytosol, plastid	23.98	22.99
CDY32964	Canola	plastid	21.58	22.61
CDY43599	Canola	plastid	21.58	22.33
CDX84930	Canola	cytosol, plastid	23.74	21.2
CDY15715	Canola	nucleus, plastid	23.5	21.12
CDY12448	Canola	plastid	22.54	21.08
CDY03911	Canola	nucleus, plastid	23.02	20.87
CDY27608	Canola	nucleus	23.26	20.86
CDY52183	Canola	plastid	22.3	20.85
CDX75335	Canola	nucleus	20.38	20.83
CDX68951	Canola	cytosol	20.14	20.44
CDY71979	Canola	cytosol	18.7	19.8
CDX72391	Canola	cytosol	18.7	19.75

Protein Annotations

EnsemblPlants:CDY43939	EnsemblPlantsGene:GSBRNA2T00077548001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	PANTHER:PTHR10706	PANTHER:PTHR10706:SF138
PFAM:PF12937	PFscan:PS50181	ProteinID:CDY43939	ProteinID:CDY43939.1	SEG:seg	SMART:SM00256
SUPFAM:SSF50965	SUPFAM:SSF81383	UniParc:UPI0004EF0D8D	UniProt:A0A078I2X8	MapMan:19.2.2.8.1.4.6	:

Description

BnaC04g21710DBnaC04g21710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I2X8]

Coordinates

chrLK032574:+:121687..126088

Molecular Weight (calculated)

47666.9 Da

IEP (calculated)

6.066

GRAVY (calculated)

-0.220

Length

417 amino acids

Sequence
(BLAST)

001: MLALPKKEVA LRMEAETSWT TYPYNYMTTY IPEAESYSEQ SDDDEETKLQ TFAIDSLLPN DLLERILSFL PIASIFRAGT VCKRWNEIVS SQRFLWIFNN
101: NSVSQGPWYF MFTTTDDPSG YAYDPVIKKW YSFDLPCIET SNWFVASSCG LVCFMDNDCR NKIYVSNPIT KQWRKLVEPP GHKATDYTAL STSMNRAKQS
201: YSVSIVKSKQ VAGDFFQWDL SIHLYSSETM TWTTSVTDVL TGWRGGDESV ICNNVLYFLI YSTGGNSDHR HGLIASNLSS STSSLMRSFI PMPCALTCGR
301: LMNLKERLVV VGRIGKHDRP EIIKGIGIWC LKEGGEWQEM ARMPQRFFQG FGELDDVFAS SGSDDLVYIQ SYGSPALLMF DMKFKCWKWS QKCPVSKKFP
401: LQLFTGFCFE PRLEITP

Best Arabidopsis Sequence Match ( AT3G61590.4 )
(BLAST)

001: MLDKVLILSL FFVFCIFDLP LCMYAKANLI DKRLLRMEAE TSWTNYPYSY ITYVPEAESY REQSDDEAKV ETFSMDSLLP DDLLERILSF LPIASIFRAG
101: TVCKRWNEIV SSRRFLCNFS NNSVSQRPWY FMFTTTDDPS GYAYDPIIRK WYSFDLPCIE TSNWFVASSC GLVCFMDNDC RNKIYVSNPI TKQWRTLIEP
201: PGHKSTDYTA MSTSVNRANQ AVNRANRSYS VSIVKSKQVP GNFFQWDLSI HLYSSETMTW TTLVNDVLSG WRGGNESVIC NNVLYFMIYS TGGSDHRHGL
301: IASNLSSIGS PSSGILMRSF IPMPCSLTCG RLMNLRERLV IVGGIGKHDR PEVIKGIGIW VLKGKEWVEM AKMPQRFFQG FGEFDEVFAS SGTDDLVYIQ
401: SYGSPALLTF DMNLKYWRWS QKCPVTKKFP LQLFTGFCFE PRLEIAP

Arabidopsis Description

HWSGalactose oxidase/kelch repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRL4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.