CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75335	Canola	nucleus	95.13	95.83
CDY71979	Canola	cytosol	77.37	80.71
CDX72391	Canola	cytosol	77.37	80.51
AT4G33160.2	Thale cress	cytosol	77.86	61.78
KRH05328	Soybean	cytosol	52.55	53.07
KRH15707	Soybean	cytosol	52.31	52.83
VIT_04s0008g03190.t01	Wine grape	cytosol	50.85	51.35
KRH61620	Soybean	cytosol	50.12	49.88
KRH52288	Soybean	cytosol	48.18	47.94
GSMUA_Achr7P11470_001	Banana	nucleus	40.63	47.44
GSMUA_Achr10P...	Banana	cytosol	46.72	46.72
PGSC0003DMT400019032	Potato	nucleus	46.47	45.69
Solyc08g067300.1.1	Tomato	nucleus	45.5	45.17
Zm00001d029442_P001	Maize	cytosol, nucleus, plastid	39.9	40.9
Os03t0399400-01	Rice	mitochondrion	39.9	40.2
KXG39191	Sorghum	nucleus	40.15	39.29
OQU90263	Sorghum	cytosol, mitochondrion, plastid	38.93	38.84
TraesCS5B01G100300.1	Wheat	cytosol, plastid	37.71	38.56
Zm00001d022151_P001	Maize	cytosol, mitochondrion, plastid	38.93	38.55
Os07t0617700-01	Rice	cytosol	37.96	38.42
TraesCS2A01G167400.1	Wheat	cytosol	38.93	38.37
TraesCS2B01G193700.1	Wheat	cytosol	38.44	38.07
Zm00001d006874_P001	Maize	cytosol	37.47	38.02
TraesCS2D01G175100.1	Wheat	cytosol	38.44	37.89
TraesCS5A01G094200.1	Wheat	cytosol	37.71	34.29
TraesCS5D01G106500.1	Wheat	cytosol	37.47	34.22
HORVU5Hr1G025530.5	Barley	cytosol	31.39	31.77
HORVU2Hr1G030810.1	Barley	plastid	38.2	28.75
CDY15715	Canola	nucleus, plastid	24.33	21.55
CDY03911	Canola	nucleus, plastid	23.36	20.87
CDY27608	Canola	nucleus	23.6	20.86
CDX84930	Canola	cytosol, plastid	23.6	20.77
CDX89124	Canola	cytosol	20.44	20.54
CDY43939	Canola	cytosol	20.44	20.14
CDX78648	Canola	cytosol, plastid	21.17	20.0
CDY52009	Canola	nucleus	19.71	19.9
CDY53910	Canola	cytosol	19.71	19.85
CDX70633	Canola	cytosol, plastid	20.92	19.82
CDX71729	Canola	mitochondrion	20.92	19.37
CDY11364	Canola	cytosol, golgi, nucleus	21.17	19.12
CDY52183	Canola	plastid	19.95	18.39
CDY12448	Canola	plastid	19.95	18.39
CDY32964	Canola	plastid	17.76	18.34
CDY43599	Canola	plastid	17.76	18.11

Protein Annotations

EnsemblPlants:CDX68951	EnsemblPlantsGene:GSBRNA2T00130697001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	PANTHER:PTHR45094	PANTHER:PTHR45094:SF2
PFAM:PF00646	PFscan:PS50181	ProteinID:CDX68951	ProteinID:CDX68951.1	SEG:seg	SMART:SM00256
SUPFAM:SSF50965	SUPFAM:SSF81383	UniParc:UPI0004EE6426	MapMan:35.1	:	:

Description

BnaC01g05020D

Coordinates

chrLK031789:+:2176888..2178123

Molecular Weight (calculated)

45978.1 Da

IEP (calculated)

4.774

GRAVY (calculated)

-0.240

Length

411 amino acids

Sequence
(BLAST)

001: MGFSAGKRKS RDEQDYTVTL ASTAFPMDDL NDDVLERVLS WLPTSSFLRM TSVCKRWKST KTSKSFNLAC SQVPLRDPWF FMITNDSNSS TFVYDSTDNS
101: WKSLNHNRNR RDFIPVASSG GLLCFRCSVS GGFLLCNPIT GSSRDLPSPI SDDYSKPLQA VAMTALTPSS YKLVTISGEA PNLCFQFYES DSGSWSKELN
201: LVKKNDGDDE YNDSSDDETG TVYFLSKTGH VVVATNNLQR SPSKQYSSVI TVKDNAETVY FLSSHGTIIA CDLTNRCFTE LPKLLPPFLE YSIDLVECNG
301: TMFVVLLSEF YESASLRIWK LENQSWVHVG MLPPAMSHEL YGREGDINCV GGAGNKILVC FNTNPPEVYC RYFVYDLVAE QWSELPKCFK DGEAVEFVSA
401: LSFQPRIEAT V

Best Arabidopsis Sequence Match ( AT4G33160.2 )
(BLAST)

001: MFTGYSFGFG DSSEEEVAQH TIFPFLLVSL SPQEYLLCRG LSTLFDRGAQ EASLLSLSLS SMPSSATSTY LLSLKQVSLT ASSPLLLQLK DRFFHQPKLL
101: NMGFSTGKRK SRDEEEDRVS FFASEFPMDD LNDDVLERVL SWLPTSCFFR MSSVCKRWKS SQTSKSFKLA CSQIPTRDPW FFMIDNDSNS SSFVFDSTEN
201: SWKNLNRRDF LHHHRQDFIP VASSGGLLCY RCSISGDFLL RNPLTGSSRD IPSQDNNNNK PLQAVAMTTT TVTPSSYTLV TISGEIPNLS FKIYESNADS
301: WSKDQELESV KNNDSSLHDD YDTDSGTVYF LSKQGNVVVA SNNLQRSPSK QYSSVITVTD EAEIVYFLSS YGTIVACDLT KRCFTELPKL LPPFLEYSID
401: LVECEGTMYV ILLSEFFESA SLRIWRLDNN REWVQVGMLP PALSHELYGK KGDINCVGGA GNKILVCFNA SPPEVYCRYF VYDLVAEEWN ELPKCFKDGE
501: AVDFVSALSF QPRIEATV

Arabidopsis Description

F-box family protein [Source:TAIR;Acc:AT4G33160]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.