CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029442_P001	Maize	cytosol, nucleus, plastid	84.05	88.03
Os03t0399400-01	Rice	mitochondrion	74.29	76.47
TraesCS5B01G100300.1	Wheat	cytosol, plastid	68.33	71.39
OQU90263	Sorghum	cytosol, mitochondrion, plastid	64.29	65.53
TraesCS5D01G106500.1	Wheat	cytosol	69.52	64.89
TraesCS5A01G094200.1	Wheat	cytosol	68.57	63.72
HORVU5Hr1G025530.5	Barley	cytosol	55.48	57.39
GSMUA_Achr7P11470_001	Banana	nucleus	41.43	49.43
GSMUA_Achr10P...	Banana	cytosol	45.24	46.23
KRH15707	Soybean	cytosol	44.29	45.7
VIT_04s0008g03190.t01	Wine grape	cytosol	44.05	45.45
KRH05328	Soybean	cytosol	44.05	45.45
KRH61620	Soybean	cytosol	42.38	43.1
KRH52288	Soybean	cytosol	42.14	42.86
CDY71979	Canola	cytosol	39.29	41.88
CDX72391	Canola	cytosol	39.05	41.52
Bra037018.1-P	Field mustard	cytosol	38.81	41.48
CDX75335	Canola	nucleus	39.29	40.44
Bra011423.1-P	Field mustard	nucleus	39.05	40.2
CDX68951	Canola	cytosol	39.29	40.15
Solyc08g067300.1.1	Tomato	nucleus	37.86	38.41
PGSC0003DMT400019032	Potato	nucleus	37.62	37.8
AT4G33160.2	Thale cress	cytosol	39.05	31.66
EES01202	Sorghum	cytosol	20.24	20.94
EES11618	Sorghum	plastid	20.0	19.91
KXG29968	Sorghum	cytosol	17.86	18.38
EES04122	Sorghum	cytosol	19.29	18.33
OQU76836	Sorghum	plastid	18.1	17.63

Protein Annotations

EnsemblPlants:KXG39191	EnsemblPlantsGene:SORBI_3001G345200	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	PANTHER:PTHR45094	PFAM:PF00646
ProteinID:KXG39191	ProteinID:KXG39191.1	SEG:seg	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383
UniParc:UPI0003C6C394	UniProt:A0A1B6QMP7	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:63388756..63390627

Molecular Weight (calculated)

44261.9 Da

IEP (calculated)

4.953

GRAVY (calculated)

-0.071

Length

420 amino acids

Sequence
(BLAST)

001: MEPPRANNNG GRKRKPTPPP AAAGGLGDLH DDMLEGVLAR LPPAAYFRLR AVCRRWRAAA ESPTFLDACA RVPSRDPWFL MLSDSDSASG SVAFDAAGRS
101: WNRLCRAAPG AAAAVPVAAW GGFVLYRAPD TGALTVANPL TGASRALPSP PPPLQSAQQQ LQAIAMYGAG AGHYYRVALF AGDLPDLSMA VFDSSSNSWE
201: GPLPLARKAG DDSSCYPDAP AQGGGGGDDD TVYFLSKSGD VVSTNMQRSA SKQYSSVVVP SSAPGDGDAV AYFLSYSGTV VACDTARRTF AELPRILPVY
301: FEYSIDVVAC GAAAYAVVLS EYLDTASLRV WEFAGGAWRQ VAAMPPAMSH GFHGTRADIN CVGHGDRLMV CVTSAEASGC FMCDVASNQW EELPKHVNGD
401: GEANEFLAAF SFEPRVEITV

Best Arabidopsis Sequence Match ( AT4G33160.1 )
(BLAST)

001: MPSSATSTYL LSLKQVSLTA SSPLLLQLKD RFFHQPKLLN MGFSTGKRKS RDEEEDRVSF FASEFPMDDL NDDVLERVLS WLPTSCFFRM SSVCKRWKSS
101: QTSKSFKLAC SQIPTRDPWF FMIDNDSNSS SFVFDSTENS WKNLNRRDFL HHHRQDFIPV ASSGGLLCYR CSISGDFLLR NPLTGSSRDI PSQDNNNNKP
201: LQAVAMTTTT VTPSSYTLVT ISGEIPNLSF KIYESNADSW SKDQELESVK NNDSSLHDDY DTDSGTVYFL SKQGNVVVAS NNLQRSPSKQ YSSVITVTDE
301: AEIVYFLSSY GTIVACDLTK RCFTELPKLL PPFLEYSIDL VECEGTMYVI LLSEFFESAS LRIWRLDNNR EWVQVGMLPP ALSHELYGKK GDINCVGGAG
401: NKILVCFNAS PPEVYCRYFV YDLVAEEWNE LPKCFKDGEA VDFVSALSFQ PRIEATV

Arabidopsis Description

F-box family protein [Source:TAIR;Acc:AT4G33160]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.