Factsheet for TraesCS5B01G100300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G106500.1	Wheat	cytosol	95.02	84.89
TraesCS5A01G094200.1	Wheat	cytosol	95.27	84.73
Os03t0399400-01	Rice	mitochondrion	73.13	72.06
Zm00001d029442_P001	Maize	cytosol, nucleus, plastid	70.15	70.32
KXG39191	Sorghum	nucleus	71.39	68.33
HORVU5Hr1G025530.5	Barley	cytosol	68.91	68.23
TraesCS2B01G193700.1	Wheat	cytosol	62.44	60.48
GSMUA_Achr7P11470_001	Banana	nucleus	40.55	46.31
KRH15707	Soybean	cytosol	45.52	44.96
VIT_04s0008g03190.t01	Wine grape	cytosol	44.53	43.98
KRH05328	Soybean	cytosol	44.28	43.73
GSMUA_Achr10P...	Banana	cytosol	44.28	43.31
KRH52288	Soybean	cytosol	43.78	42.62
KRH61620	Soybean	cytosol	43.53	42.37
CDY71979	Canola	cytosol	38.31	39.09
CDX72391	Canola	cytosol	38.31	38.99
Bra037018.1-P	Field mustard	cytosol	38.06	38.93
CDX68951	Canola	cytosol	38.56	37.71
CDX75335	Canola	nucleus	38.06	37.5
Bra011423.1-P	Field mustard	nucleus	38.06	37.5
Solyc08g067300.1.1	Tomato	nucleus	38.56	37.44
PGSC0003DMT400019032	Potato	nucleus	37.81	36.36
AT4G33160.2	Thale cress	cytosol	39.05	30.31
TraesCS3B01G267600.1	Wheat	cytosol	18.41	18.41
TraesCS3B01G470300.2	Wheat	cytosol	20.4	18.34
TraesCS7B01G384000.1	Wheat	extracellular, plasma membrane, plastid	19.65	16.36

Protein Annotations

EnsemblPlants:TraesCS5B01G100300.1	EnsemblPlantsGene:TraesCS5B01G100300	Gene3D:1.20.1280.50	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	InterPro:IPR015943
InterPro:WD40/YVTN_repeat-like_dom_sf	ncoils:Coil	PANTHER:PTHR45094	PFAM:PF00646	SUPFAM:SSF50965	SUPFAM:SSF81383
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:133417557..133419005

Molecular Weight (calculated)

43224.7 Da

IEP (calculated)

6.388

GRAVY (calculated)

0.010

Length

402 amino acids

Sequence
(BLAST)

001: MSGRMELSAQ MSMAPPTNGG KRRCSRPGLG DIHEDMLERV LARLPPASFF RLRAVCREWR AVAACATFLD ACARVPPRDP WFIMLPERPR PVVAFDAAGR
101: SWNACRAPTG SMPVAASGGL VLYSVLATGA LCVSNPLTGA TRALPTPPQG QSQGVPQLHA IAMYGSPYRV ALFTGELPDL SMAVFDSSEG SWEEPVPLAR
201: RSGTSSPDAP PHGGDDTVYF LSKSGDVVAT NMKRSSLKQY SSAVVPSECG AVVYFLSHSG TVLACDTASR TFAELPRILP VHFEYSIDVV ACNGASYAVV
301: LSEYLDTASL RVWQFAEGAW RQVAAMPPGM AHGFYGKKAD INCVGHGDRV MVCVSSGEVN GCFMCDVRSN QWEELPKCIN GDGEIIDFLA AFSFEPRVEI
401: NV

Best Arabidopsis Sequence Match ( AT4G33160.1 )
(BLAST)

001: MPSSATSTYL LSLKQVSLTA SSPLLLQLKD RFFHQPKLLN MGFSTGKRKS RDEEEDRVSF FASEFPMDDL NDDVLERVLS WLPTSCFFRM SSVCKRWKSS
101: QTSKSFKLAC SQIPTRDPWF FMIDNDSNSS SFVFDSTENS WKNLNRRDFL HHHRQDFIPV ASSGGLLCYR CSISGDFLLR NPLTGSSRDI PSQDNNNNKP
201: LQAVAMTTTT VTPSSYTLVT ISGEIPNLSF KIYESNADSW SKDQELESVK NNDSSLHDDY DTDSGTVYFL SKQGNVVVAS NNLQRSPSKQ YSSVITVTDE
301: AEIVYFLSSY GTIVACDLTK RCFTELPKLL PPFLEYSIDL VECEGTMYVI LLSEFFESAS LRIWRLDNNR EWVQVGMLPP ALSHELYGKK GDINCVGGAG
401: NKILVCFNAS PPEVYCRYFV YDLVAEEWNE LPKCFKDGEA VDFVSALSFQ PRIEATV

Arabidopsis Description

F-box family protein [Source:TAIR;Acc:AT4G33160]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.