CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15707	Soybean	cytosol	92.38	92.38
KRH61620	Soybean	cytosol	79.12	77.97
KRH52288	Soybean	cytosol	78.62	77.48
VIT_04s0008g03190.t01	Wine grape	cytosol	62.41	62.41
GSMUA_Achr7P11470_001	Banana	nucleus	47.67	55.11
GSMUA_Achr10P...	Banana	cytosol	54.3	53.77
CDY71979	Canola	cytosol	51.6	53.3
Bra037018.1-P	Field mustard	cytosol	51.35	53.18
CDX72391	Canola	cytosol	51.6	53.16
Bra011423.1-P	Field mustard	nucleus	53.07	52.94
CDX75335	Canola	nucleus	52.83	52.7
CDX68951	Canola	cytosol	53.07	52.55
PGSC0003DMT400019032	Potato	nucleus	52.09	50.72
Solyc08g067300.1.1	Tomato	nucleus	51.11	50.24
Os03t0399400-01	Rice	mitochondrion	46.68	46.57
Zm00001d029442_P001	Maize	cytosol, nucleus, plastid	44.96	45.64
Os07t0617700-01	Rice	cytosol	44.72	44.83
TraesCS2A01G167400.1	Wheat	cytosol	45.7	44.6
TraesCS5B01G100300.1	Wheat	cytosol, plastid	43.73	44.28
TraesCS2D01G175100.1	Wheat	cytosol	45.21	44.12
KXG39191	Sorghum	nucleus	45.45	44.05
OQU90263	Sorghum	cytosol, mitochondrion, plastid	44.23	43.69
TraesCS2B01G193700.1	Wheat	cytosol	44.47	43.61
Zm00001d022151_P001	Maize	cytosol, mitochondrion, plastid	44.47	43.61
AT4G33160.2	Thale cress	cytosol	54.79	43.05
Zm00001d006874_P001	Maize	cytosol	42.26	42.47
TraesCS5D01G106500.1	Wheat	cytosol	44.23	40.0
TraesCS5A01G094200.1	Wheat	cytosol	43.49	39.16
HORVU2Hr1G030810.1	Barley	plastid	45.7	34.07
HORVU5Hr1G025530.5	Barley	cytosol	33.91	33.99
KRH52086	Soybean	plastid	18.67	21.84
KRH61403	Soybean	plastid	19.16	21.73
KRH15449	Soybean	cytosol, mitochondrion, nucleus	20.15	21.13
KRH31515	Soybean	cytosol	23.34	21.11
KRH58532	Soybean	plastid	21.38	20.23
KRH68853	Soybean	cytosol	19.9	20.1
KRH45144	Soybean	cytosol, plastid	21.62	20.09
KRH42420	Soybean	plastid	21.62	20.0
KRH42677	Soybean	cytosol, nucleus, plasma membrane	22.11	19.87
KRG97101	Soybean	cytosol	19.66	19.75
KRG97395	Soybean	cytosol	22.11	19.48
KRH58777	Soybean	cytosol	21.13	18.94
KRH01425	Soybean	cytosol	20.88	18.81
KRH47995	Soybean	cytosol	11.3	17.1

Protein Annotations

EntrezGene:100801096	Gene3D:3.80.10.10	MapMan:35.1	EMBL:ACUP02010726	EMBL:BT095517	UniProt:C6TD64
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_17G220600	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031146	InterPro:Gal_Oxase/kelch_b-propeller
InterPro:IPR001810	InterPro:IPR032675	EnsemblPlants:KRH05328	ProteinID:KRH05328	ProteinID:KRH05328.1	InterPro:LRR_dom_sf
PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR45094	PANTHER:PTHR45094:SF2	SMART:SM00256	SUPFAM:SSF50965
SUPFAM:SSF81383	UniParc:UPI0001B1653E	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:37261665..37264008

Molecular Weight (calculated)

45596.4 Da

IEP (calculated)

4.705

GRAVY (calculated)

-0.005

Length

407 amino acids

Sequence
(BLAST)

001: MEHSLKRKSP ESGDNLLFNR FSLDDLNEDL LERVLSWLPT SSFFRLTSVC KRWKSAAASV SFKLACSHVP SRDPWFLMVA PNLNQSIVFD TAENSWKRLN
101: HLHLPLEDSN ISCMPVAASG GLVCYRKLLG NFVVCNPVTG SCSELPPLHF ALENQSLNAV VMSTTFNDQM SYKIVLVFGE LPNLLFKVYN SGSSCWEDEA
201: ALRRNVDDNS MDCDSTDDDN VVYFLSKAGT VVVSSMQRSP SKQYSSVITN KDGQEIVYFL SSSGTVVACN LTSRCFLEYP RLLPVFSEYS IDIVECGGEM
301: VVVLLSEFLE STSLRVWKYD EANRCWQQIA AMPAAMSQEW YGKKADINCV GASGRIFICL NSPELCTYVL CDLVTNKWTE LPKCCLNGEV MEFMSAFSFE
401: PRIEASV

Best Arabidopsis Sequence Match ( AT4G33160.2 )
(BLAST)

001: MFTGYSFGFG DSSEEEVAQH TIFPFLLVSL SPQEYLLCRG LSTLFDRGAQ EASLLSLSLS SMPSSATSTY LLSLKQVSLT ASSPLLLQLK DRFFHQPKLL
101: NMGFSTGKRK SRDEEEDRVS FFASEFPMDD LNDDVLERVL SWLPTSCFFR MSSVCKRWKS SQTSKSFKLA CSQIPTRDPW FFMIDNDSNS SSFVFDSTEN
201: SWKNLNRRDF LHHHRQDFIP VASSGGLLCY RCSISGDFLL RNPLTGSSRD IPSQDNNNNK PLQAVAMTTT TVTPSSYTLV TISGEIPNLS FKIYESNADS
301: WSKDQELESV KNNDSSLHDD YDTDSGTVYF LSKQGNVVVA SNNLQRSPSK QYSSVITVTD EAEIVYFLSS YGTIVACDLT KRCFTELPKL LPPFLEYSID
401: LVECEGTMYV ILLSEFFESA SLRIWRLDNN REWVQVGMLP PALSHELYGK KGDINCVGGA GNKILVCFNA SPPEVYCRYF VYDLVAEEWN ELPKCFKDGE
501: AVDFVSALSF QPRIEATV

Arabidopsis Description

F-box family protein [Source:TAIR;Acc:AT4G33160]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.