CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037018.1-P	Field mustard	cytosol	97.97	98.22
CDX72391	Canola	cytosol	93.4	93.16
CDX68951	Canola	cytosol	80.71	77.37
CDX75335	Canola	nucleus	79.95	77.21
AT4G33160.2	Thale cress	cytosol	77.41	58.88
KRH15707	Soybean	cytosol	53.3	51.6
KRH05328	Soybean	cytosol	53.3	51.6
VIT_04s0008g03190.t01	Wine grape	cytosol	52.03	50.37
KRH61620	Soybean	cytosol	51.02	48.67
KRH52288	Soybean	cytosol	49.24	46.97
GSMUA_Achr7P11470_001	Banana	nucleus	40.61	45.45
GSMUA_Achr10P...	Banana	cytosol	47.21	45.26
PGSC0003DMT400019032	Potato	nucleus	46.95	44.26
Solyc08g067300.1.1	Tomato	nucleus	45.94	43.72
Zm00001d029442_P001	Maize	cytosol, nucleus, plastid	41.37	40.65
OQU90263	Sorghum	cytosol, mitochondrion, plastid	42.13	40.29
Zm00001d022151_P001	Maize	cytosol, mitochondrion, plastid	41.62	39.52
Zm00001d006874_P001	Maize	cytosol	40.61	39.51
Os03t0399400-01	Rice	mitochondrion	40.86	39.46
KXG39191	Sorghum	nucleus	41.88	39.29
Os07t0617700-01	Rice	cytosol	40.36	39.16
TraesCS2A01G167400.1	Wheat	cytosol	41.37	39.09
TraesCS2B01G193700.1	Wheat	cytosol	40.86	38.8
TraesCS2D01G175100.1	Wheat	cytosol	40.86	38.61
TraesCS5B01G100300.1	Wheat	cytosol, plastid	39.09	38.31
TraesCS5D01G106500.1	Wheat	cytosol	40.61	35.56
TraesCS5A01G094200.1	Wheat	cytosol	39.34	34.29
HORVU5Hr1G025530.5	Barley	cytosol	31.47	30.54
HORVU2Hr1G030810.1	Barley	plastid	40.86	29.49
CDY15715	Canola	nucleus, plastid	23.86	20.26
CDY03911	Canola	nucleus, plastid	23.1	19.78
CDY27608	Canola	nucleus	23.1	19.57
CDX84930	Canola	cytosol, plastid	22.84	19.27
CDX78648	Canola	cytosol, plastid	21.07	19.08
CDX70633	Canola	cytosol, plastid	20.81	18.89
CDX89124	Canola	cytosol	19.54	18.83
CDY43939	Canola	cytosol	19.8	18.7
CDY52009	Canola	nucleus	18.53	17.94
CDY53910	Canola	cytosol	18.53	17.89
CDX71729	Canola	mitochondrion	20.05	17.79
CDY11364	Canola	cytosol, golgi, nucleus	20.3	17.58
CDY32964	Canola	plastid	17.51	17.34
CDY43599	Canola	plastid	17.51	17.12
CDY52183	Canola	plastid	19.29	17.04
CDY12448	Canola	plastid	19.29	17.04

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078JZ68	EnsemblPlants:CDY71979	ProteinID:CDY71979	ProteinID:CDY71979.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00022946001
InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	PFAM:PF00646	PFscan:PS50181
PANTHER:PTHR45094	PANTHER:PTHR45094:SF2	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383	UniParc:UPI0004EE1E23
SEG:seg	:	:	:	:	:

Description

BnaAnng39500DBnaAnng39500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JZ68]

Coordinates

chrLK048388:-:386..1570

Molecular Weight (calculated)

44254.6 Da

IEP (calculated)

6.504

GRAVY (calculated)

-0.146

Length

394 amino acids

Sequence
(BLAST)

001: MGFSAGKRKS RDEAVTLSDL NDDVLERVLS HLPTSSYFRM TSVCKRWKST QTSTTFKLAC SRVPSRDPWF FMIAKDSTSS SSSFVYDSTE NSWKNLNRSL
101: LLRHRRDFTP VASSGGLLCF RSSVSGDFLL RNPLTGSSID LPWQDDNKPL QAVAMTTSYK LVTISGEVPN LCFRFYESSS CSWSKEFELV IKNNTKDGDD
201: TETVYFLSKS GNVVVASNTL LRTPSKQYSS VITVKDNVET VYFLTSHGTI IACDLAKRSF THLPKLLPPF LEYSIDLVEC NGTMFVVLLS EFYESASLRI
301: WKLEDMNWVH VGMLPPAMSH ELYGRKGDIN CVGGAGGNKI LVCFNADLPE VCCRYFVYDL VGEEWSELPR CFKDGEAVEF VSALSFQPRI EATV

Best Arabidopsis Sequence Match ( AT4G33160.2 )
(BLAST)

001: MFTGYSFGFG DSSEEEVAQH TIFPFLLVSL SPQEYLLCRG LSTLFDRGAQ EASLLSLSLS SMPSSATSTY LLSLKQVSLT ASSPLLLQLK DRFFHQPKLL
101: NMGFSTGKRK SRDEEEDRVS FFASEFPMDD LNDDVLERVL SWLPTSCFFR MSSVCKRWKS SQTSKSFKLA CSQIPTRDPW FFMIDNDSNS SSFVFDSTEN
201: SWKNLNRRDF LHHHRQDFIP VASSGGLLCY RCSISGDFLL RNPLTGSSRD IPSQDNNNNK PLQAVAMTTT TVTPSSYTLV TISGEIPNLS FKIYESNADS
301: WSKDQELESV KNNDSSLHDD YDTDSGTVYF LSKQGNVVVA SNNLQRSPSK QYSSVITVTD EAEIVYFLSS YGTIVACDLT KRCFTELPKL LPPFLEYSID
401: LVECEGTMYV ILLSEFFESA SLRIWRLDNN REWVQVGMLP PALSHELYGK KGDINCVGGA GNKILVCFNA SPPEVYCRYF VYDLVAEEWN ELPKCFKDGE
501: AVDFVSALSF QPRIEATV

Arabidopsis Description

F-box family protein [Source:TAIR;Acc:AT4G33160]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.