Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g067300.1.1 | Tomato | nucleus | 91.63 | 92.51 |
| VIT_04s0008g03190.t01 | Wine grape | cytosol | 53.35 | 54.79 |
| KRH05328 | Soybean | cytosol | 50.72 | 52.09 |
| KRH15707 | Soybean | cytosol | 50.24 | 51.6 |
| KRH61620 | Soybean | cytosol | 50.0 | 50.61 |
| GSMUA_Achr7P11470_001 | Banana | nucleus | 42.11 | 50.0 |
| KRH52288 | Soybean | cytosol | 49.28 | 49.88 |
| Bra011423.1-P | Field mustard | nucleus | 45.93 | 47.06 |
| CDY71979 | Canola | cytosol | 44.26 | 46.95 |
| CDX75335 | Canola | nucleus | 45.45 | 46.57 |
| Bra037018.1-P | Field mustard | cytosol | 43.78 | 46.56 |
| CDX68951 | Canola | cytosol | 45.69 | 46.47 |
| CDX72391 | Canola | cytosol | 43.78 | 46.33 |
| GSMUA_Achr10P... | Banana | cytosol | 45.45 | 46.23 |
| Zm00001d006874_P001 | Maize | cytosol | 39.23 | 40.49 |
| Zm00001d029442_P001 | Maize | cytosol, nucleus, plastid | 38.76 | 40.4 |
| Os03t0399400-01 | Rice | mitochondrion | 39.0 | 39.95 |
| OQU90263 | Sorghum | cytosol, mitochondrion, plastid | 39.23 | 39.81 |
| Os07t0617700-01 | Rice | cytosol | 38.28 | 39.41 |
| TraesCS2A01G167400.1 | Wheat | cytosol | 39.23 | 39.33 |
| TraesCS2D01G175100.1 | Wheat | cytosol | 39.23 | 39.33 |
| Zm00001d022151_P001 | Maize | cytosol, mitochondrion, plastid | 38.76 | 39.04 |
| TraesCS2B01G193700.1 | Wheat | cytosol | 38.04 | 38.31 |
| AT4G33160.2 | Thale cress | cytosol | 47.37 | 38.22 |
| TraesCS5B01G100300.1 | Wheat | cytosol, plastid | 36.36 | 37.81 |
| KXG39191 | Sorghum | nucleus | 37.8 | 37.62 |
| TraesCS5D01G106500.1 | Wheat | cytosol | 37.8 | 35.11 |
| TraesCS5A01G094200.1 | Wheat | cytosol | 36.12 | 33.41 |
| HORVU5Hr1G025530.5 | Barley | cytosol | 29.67 | 30.54 |
| HORVU2Hr1G030810.1 | Barley | plastid | 38.76 | 29.67 |
| PGSC0003DMT400027543 | Potato | cytosol | 21.29 | 23.36 |
| PGSC0003DMT400000251 | Potato | cytosol | 20.1 | 20.74 |
| PGSC0003DMT400084722 | Potato | cytosol, mitochondrion | 22.73 | 20.39 |
| PGSC0003DMT400003737 | Potato | cytosol | 19.14 | 18.26 |
| PGSC0003DMT400045739 | Potato | plastid | 18.42 | 16.81 |
Protein Annotations
| EntrezGene:102597918 | Gene3D:3.80.10.10 | MapMan:35.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:Gal_Oxase/kelch_b-propeller | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| UniProt:M1ABI4 | PFAM:PF00646 | EnsemblPlantsGene:PGSC0003DMG400007376 | PGSC:PGSC0003DMG400007376 | EnsemblPlants:PGSC0003DMT400019032 | PFscan:PS50181 |
| PANTHER:PTHR45094 | PANTHER:PTHR45094:SF2 | SMART:SM00256 | SUPFAM:SSF50965 | SUPFAM:SSF81383 | UniParc:UPI0002967F18 |
| RefSeq:XP_006361528.1 | SEG:seg | : | : | : | : |
Description
Ubiquitin-protein ligase [Source:PGSC_GENE;Acc:PGSC0003DMG400007376]
Coordinates
chr8:-:40812188..40813595
Molecular Weight (calculated)
47519.7 Da
IEP (calculated)
4.569
GRAVY (calculated)
-0.307
Length
418 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRRNLKRK SIEDEDLVFP FDELNQDLLE RVLSWLPTST FLRLSSVSKR WKSAANSPVF HHACSEIPSR EPWFYMVDSS QSVEFKNQQH FVYDSAEMNW
101: KFLTYPSNFL EENQLNQSNF LPVAASGGLL CFHNGENGEF LICNPVTSSY RKLPLLDYSD TLSAIGMIST QESYKLFLIF GEIPNLSFRI YDSTTDSWKD
201: SAILSKKSPT CPAAQSCSTD DEEEEDDDRM LYFLSKCGNV VGTEIQKNPC KQYSSITTTT KGDGQEILCF LNSSGKVVAC NLTEKHFFEY PRLLPLHHEY
301: SIDLVECGGE LLAVVLSEFL ETASLRIWKF DENEWAWNQV LAMPSAISHE FYSKKVDINC TGSSEHMFVC ISNSGSTDDE SCRYFLCKLA ENEWTELPAC
401: SGKFSCAFSF QPRIEASV
101: KFLTYPSNFL EENQLNQSNF LPVAASGGLL CFHNGENGEF LICNPVTSSY RKLPLLDYSD TLSAIGMIST QESYKLFLIF GEIPNLSFRI YDSTTDSWKD
201: SAILSKKSPT CPAAQSCSTD DEEEEDDDRM LYFLSKCGNV VGTEIQKNPC KQYSSITTTT KGDGQEILCF LNSSGKVVAC NLTEKHFFEY PRLLPLHHEY
301: SIDLVECGGE LLAVVLSEFL ETASLRIWKF DENEWAWNQV LAMPSAISHE FYSKKVDINC TGSSEHMFVC ISNSGSTDDE SCRYFLCKLA ENEWTELPAC
401: SGKFSCAFSF QPRIEASV
001: MPSSATSTYL LSLKQVSLTA SSPLLLQLKD RFFHQPKLLN MGFSTGKRKS RDEEEDRVSF FASEFPMDDL NDDVLERVLS WLPTSCFFRM SSVCKRWKSS
101: QTSKSFKLAC SQIPTRDPWF FMIDNDSNSS SFVFDSTENS WKNLNRRDFL HHHRQDFIPV ASSGGLLCYR CSISGDFLLR NPLTGSSRDI PSQDNNNNKP
201: LQAVAMTTTT VTPSSYTLVT ISGEIPNLSF KIYESNADSW SKDQELESVK NNDSSLHDDY DTDSGTVYFL SKQGNVVVAS NNLQRSPSKQ YSSVITVTDE
301: AEIVYFLSSY GTIVACDLTK RCFTELPKLL PPFLEYSIDL VECEGTMYVI LLSEFFESAS LRIWRLDNNR EWVQVGMLPP ALSHELYGKK GDINCVGGAG
401: NKILVCFNAS PPEVYCRYFV YDLVAEEWNE LPKCFKDGEA VDFVSALSFQ PRIEATV
101: QTSKSFKLAC SQIPTRDPWF FMIDNDSNSS SFVFDSTENS WKNLNRRDFL HHHRQDFIPV ASSGGLLCYR CSISGDFLLR NPLTGSSRDI PSQDNNNNKP
201: LQAVAMTTTT VTPSSYTLVT ISGEIPNLSF KIYESNADSW SKDQELESVK NNDSSLHDDY DTDSGTVYFL SKQGNVVVAS NNLQRSPSKQ YSSVITVTDE
301: AEIVYFLSSY GTIVACDLTK RCFTELPKLL PPFLEYSIDL VECEGTMYVI LLSEFFESAS LRIWRLDNNR EWVQVGMLPP ALSHELYGKK GDINCVGGAG
401: NKILVCFNAS PPEVYCRYFV YDLVAEEWNE LPKCFKDGEA VDFVSALSFQ PRIEATV
Arabidopsis Description
F-box family protein [Source:TAIR;Acc:AT4G33160]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.